BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-21-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-21-5p MIMAT0019188 Rhesus lymphocryptovirus miR-rL1... 16 6.9
oha-miR-219-5p MIMAT0036841 Ophiophagus hannah miR-219-5p 14 27
tch-miR-219-5p MIMAT0036551 Tupaia chinensis miR-219-5p 14 27
chi-miR-219 MIMAT0036067 Capra hircus miR-219 14 27
dvi-miR-9542a-3p MIMAT0035625 Drosophila virilis miR-9542a-3p 14 27
gsa-miR-219-5p MIMAT0035264 Gyrodactylus salaris miR-219-5p 14 27
efu-miR-219 MIMAT0035056 Eptesicus fuscus miR-219 14 27
sma-miR-219-5p MIMAT0033504 Schistosoma mansoni miR-219-5p 14 27
ppc-miR-8311-5p MIMAT0033152 Pristionchus pacificus miR-8311-5p 14 27
ssa-miR-219c-5p MIMAT0032530 Salmo salar miR-219c-5p 14 27
ssa-miR-219b-5p MIMAT0032528 Salmo salar miR-219b-5p 14 27
ssa-miR-219a-5p MIMAT0032526 Salmo salar miR-219a-5p 14 27
bbe-miR-219-5p MIMAT0031650 Branchiostoma belcheri miR-219-5p 14 27
lva-miR-219-5p MIMAT0032215 Lytechinus variegatus miR-219-5p 14 27
pmi-miR-219-5p MIMAT0032168 Patiria miniata miR-219-5p 14 27
hsa-miR-6766-3p MIMAT0027433 Homo sapiens miR-6766-3p 14 27
pol-miR-219-5p MIMAT0025446 Paralichthys olivaceus miR-219-5p 14 27
sko-miR-219 MIMAT0022768 Saccoglossus kowalevskii miR-219 14 27
ssl-miR1078 MIMAT0022523 Salvia sclarea miR1078 14 27
aca-miR-219-5p MIMAT0021884 Anolis carolinensis miR-219-5p 14 27
emu-miR-219 MIMAT0020271 Echinococcus multilocularis miR-219 14 27
egr-miR-219 MIMAT0020246 Echinococcus granulosus miR-219 14 27
xbo-miR-219 MIMAT0020122 Xenoturbella bocki miR-219 14 27
hsa-miR-4782-3p MIMAT0019945 Homo sapiens miR-4782-3p 14 27
nlo-miR-219 MIMAT0018426 Nasonia longicornis miR-219 14 27
ngi-miR-219 MIMAT0018391 Nasonia giraulti miR-219 14 27
ahy-miR3519 MIMAT0016345 Arachis hypogaea miR3519 14 27
sja-miR-219-5p MIMAT0016267 Schistosoma japonicum miR-219-5p 14 27
ppy-miR-508-3p MIMAT0015932 Pongo pygmaeus miR-508-3p 14 27
ppy-miR-219-5p MIMAT0015804 Pongo pygmaeus miR-219-5p 14 27
nvi-miR-219 MIMAT0015690 Nasonia vitripennis miR-219 14 27
api-miR-219 MIMAT0014717 Acyrthosiphon pisum miR-219 14 27
tgu-miR-219a MIMAT0014568 Taeniopygia guttata miR-219a 14 27
aae-miR-219 MIMAT0014307 Aedes aegypti miR-219 14 27
eca-miR-508-3p MIMAT0013232 Equus caballus miR-508-3p 14 27
eca-miR-219-5p MIMAT0013099 Equus caballus miR-219-5p 14 27
isc-miR-219 MIMAT0012690 Ixodes scapularis miR-219 14 27
dpu-miR-219 MIMAT0012645 Daphnia pulex miR-219 14 27
mtr-miR2651 MIMAT0013423 Medicago truncatula miR2651 14 27
dre-miR-2189 MIMAT0011311 Danio rerio miR-2189 14 27
bfl-miR-219 MIMAT0010012 Branchiostoma floridae miR-219 14 27
spu-miR-219-5p MIMAT0009685 Strongylocentrotus purpuratus miR-21... 14 27
cte-miR-219 MIMAT0009556 Capitella teleta miR-219 14 27
bta-miR-219-5p MIMAT0009269 Bos taurus miR-219-5p 14 27
dya-miR-219 MIMAT0009107 Drosophila yakuba miR-219 14 27
dwi-miR-219 MIMAT0009012 Drosophila willistoni miR-219 14 27
dvi-miR-219-5p MIMAT0008978 Drosophila virilis miR-219-5p 14 27
dsi-miR-219 MIMAT0008868 Drosophila simulans miR-219 14 27
dse-miR-219 MIMAT0008824 Drosophila sechellia miR-219 14 27
dpe-miR-219 MIMAT0008719 Drosophila persimilis miR-219 14 27
dmo-miR-219 MIMAT0008638 Drosophila mojavensis miR-219 14 27
dgr-miR-219 MIMAT0008561 Drosophila grimshawi miR-219 14 27
der-miR-219 MIMAT0008552 Drosophila erecta miR-219 14 27
dan-miR-219 MIMAT0008474 Drosophila ananassae miR-219 14 27
tca-miR-219-5p MIMAT0008377 Tribolium castaneum miR-219-5p 14 27
ptr-miR-219-5p MIMAT0009193 Pan troglodytes miR-219-5p 14 27
cfa-miR-219-5p MIMAT0006611 Canis familiaris miR-219-5p 14 27
mml-miR-219-5p MIMAT0006245 Macaca mulatta miR-219-5p 14 27
csa-miR-219 MIMAT0006137 Ciona savignyi miR-219 14 27
cin-miR-219-5p MIMAT0006113 Ciona intestinalis miR-219-5p 14 27
odi-miR-219 MIMAT0006084 Oikopleura dioica miR-219 14 27
oan-miR-219-5p MIMAT0006899 Ornithorhynchus anatinus miR-219-5p 14 27
pbi-miR-508 MIMAT0005781 Pygathrix bieti miR-508 14 27
ptr-miR-508 MIMAT0005772 Pan troglodytes miR-508 14 27
mml-miR-508-3p MIMAT0005764 Macaca mulatta miR-508-3p 14 27
ssy-miR-508 MIMAT0005754 Symphalangus syndactylus miR-508 14 27
mdo-miR-219-5p MIMAT0004134 Monodelphis domestica miR-219-5p 14 27
sme-miR-219-5p MIMAT0004006 Schmidtea mediterranea miR-219-5p 14 27
xtr-miR-219 MIMAT0003632 Xenopus tropicalis miR-219 14 27
tni-miR-219 MIMAT0002901 Tetraodon nigroviridis miR-219 14 27
fru-miR-219 MIMAT0002900 Fugu rubripes miR-219 14 27
hsa-miR-508-3p MIMAT0002880 Homo sapiens miR-508-3p 14 27
ppy-miR-219 MIMAT0002577 Pongo pygmaeus miR-219 14 27
ggo-miR-219 MIMAT0002576 Gorilla gorilla miR-219 14 27
mml-miR-219 MIMAT0002575 Macaca mulatta miR-219 14 27
aga-miR-219 MIMAT0001506 Anopheles gambiae miR-219 14 27
ame-miR-219 MIMAT0001478 Apis mellifera miR-219 14 27
dre-miR-219-5p MIMAT0001286 Danio rerio miR-219-5p 14 27
dps-miR-219 MIMAT0001234 Drosophila pseudoobscura miR-219 14 27
gga-miR-219a MIMAT0001170 Gallus gallus miR-219a 14 27
rno-miR-219a-5p MIMAT0000889 Rattus norvegicus miR-219a-5p 14 27
mmu-miR-219a-5p MIMAT0000664 Mus musculus miR-219a-5p 14 27
dme-miR-219-5p MIMAT0000335 Drosophila melanogaster miR-219-5p 14 27
hsa-miR-219a-5p MIMAT0000276 Homo sapiens miR-219a-5p 14 27
>rlcv-miR-rL1-21-5p MIMAT0019188 Rhesus lymphocryptovirus
miR-rL1-21-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgattgt 8
||||||||
Sbjct: 1 ttgattgt 8
>oha-miR-219-5p MIMAT0036841 Ophiophagus hannah miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>tch-miR-219-5p MIMAT0036551 Tupaia chinensis miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>chi-miR-219 MIMAT0036067 Capra hircus miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dvi-miR-9542a-3p MIMAT0035625 Drosophila virilis miR-9542a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgattg 7
|||||||
Sbjct: 2 ttgattg 8
>gsa-miR-219-5p MIMAT0035264 Gyrodactylus salaris miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>efu-miR-219 MIMAT0035056 Eptesicus fuscus miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>sma-miR-219-5p MIMAT0033504 Schistosoma mansoni miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ppc-miR-8311-5p MIMAT0033152 Pristionchus pacificus miR-8311-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ssa-miR-219c-5p MIMAT0032530 Salmo salar miR-219c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ssa-miR-219b-5p MIMAT0032528 Salmo salar miR-219b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ssa-miR-219a-5p MIMAT0032526 Salmo salar miR-219a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>bbe-miR-219-5p MIMAT0031650 Branchiostoma belcheri miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>lva-miR-219-5p MIMAT0032215 Lytechinus variegatus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>pmi-miR-219-5p MIMAT0032168 Patiria miniata miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>hsa-miR-6766-3p MIMAT0027433 Homo sapiens miR-6766-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>pol-miR-219-5p MIMAT0025446 Paralichthys olivaceus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>sko-miR-219 MIMAT0022768 Saccoglossus kowalevskii miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ssl-miR1078 MIMAT0022523 Salvia sclarea miR1078
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgattg 7
|||||||
Sbjct: 2 ttgattg 8
>aca-miR-219-5p MIMAT0021884 Anolis carolinensis miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>emu-miR-219 MIMAT0020271 Echinococcus multilocularis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>egr-miR-219 MIMAT0020246 Echinococcus granulosus miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>xbo-miR-219 MIMAT0020122 Xenoturbella bocki miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>hsa-miR-4782-3p MIMAT0019945 Homo sapiens miR-4782-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>nlo-miR-219 MIMAT0018426 Nasonia longicornis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ngi-miR-219 MIMAT0018391 Nasonia giraulti miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ahy-miR3519 MIMAT0016345 Arachis hypogaea miR3519
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgattg 7
|||||||
Sbjct: 8 ttgattg 2
>sja-miR-219-5p MIMAT0016267 Schistosoma japonicum miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ppy-miR-508-3p MIMAT0015932 Pongo pygmaeus miR-508-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ppy-miR-219-5p MIMAT0015804 Pongo pygmaeus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>nvi-miR-219 MIMAT0015690 Nasonia vitripennis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>api-miR-219 MIMAT0014717 Acyrthosiphon pisum miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>tgu-miR-219a MIMAT0014568 Taeniopygia guttata miR-219a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>aae-miR-219 MIMAT0014307 Aedes aegypti miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>eca-miR-508-3p MIMAT0013232 Equus caballus miR-508-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>eca-miR-219-5p MIMAT0013099 Equus caballus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>isc-miR-219 MIMAT0012690 Ixodes scapularis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dpu-miR-219 MIMAT0012645 Daphnia pulex miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mtr-miR2651 MIMAT0013423 Medicago truncatula miR2651
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgattg 7
|||||||
Sbjct: 2 ttgattg 8
>dre-miR-2189 MIMAT0011311 Danio rerio miR-2189
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>bfl-miR-219 MIMAT0010012 Branchiostoma floridae miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>spu-miR-219-5p MIMAT0009685 Strongylocentrotus purpuratus
miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>cte-miR-219 MIMAT0009556 Capitella teleta miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>bta-miR-219-5p MIMAT0009269 Bos taurus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dya-miR-219 MIMAT0009107 Drosophila yakuba miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dwi-miR-219 MIMAT0009012 Drosophila willistoni miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dvi-miR-219-5p MIMAT0008978 Drosophila virilis miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dsi-miR-219 MIMAT0008868 Drosophila simulans miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dse-miR-219 MIMAT0008824 Drosophila sechellia miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dpe-miR-219 MIMAT0008719 Drosophila persimilis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dmo-miR-219 MIMAT0008638 Drosophila mojavensis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dgr-miR-219 MIMAT0008561 Drosophila grimshawi miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>der-miR-219 MIMAT0008552 Drosophila erecta miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dan-miR-219 MIMAT0008474 Drosophila ananassae miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>tca-miR-219-5p MIMAT0008377 Tribolium castaneum miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ptr-miR-219-5p MIMAT0009193 Pan troglodytes miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>cfa-miR-219-5p MIMAT0006611 Canis familiaris miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mml-miR-219-5p MIMAT0006245 Macaca mulatta miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>csa-miR-219 MIMAT0006137 Ciona savignyi miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>cin-miR-219-5p MIMAT0006113 Ciona intestinalis miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>odi-miR-219 MIMAT0006084 Oikopleura dioica miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>oan-miR-219-5p MIMAT0006899 Ornithorhynchus anatinus miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>pbi-miR-508 MIMAT0005781 Pygathrix bieti miR-508
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ptr-miR-508 MIMAT0005772 Pan troglodytes miR-508
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mml-miR-508-3p MIMAT0005764 Macaca mulatta miR-508-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ssy-miR-508 MIMAT0005754 Symphalangus syndactylus miR-508
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mdo-miR-219-5p MIMAT0004134 Monodelphis domestica miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>sme-miR-219-5p MIMAT0004006 Schmidtea mediterranea miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>xtr-miR-219 MIMAT0003632 Xenopus tropicalis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>tni-miR-219 MIMAT0002901 Tetraodon nigroviridis miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>fru-miR-219 MIMAT0002900 Fugu rubripes miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>hsa-miR-508-3p MIMAT0002880 Homo sapiens miR-508-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ppy-miR-219 MIMAT0002577 Pongo pygmaeus miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ggo-miR-219 MIMAT0002576 Gorilla gorilla miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mml-miR-219 MIMAT0002575 Macaca mulatta miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>aga-miR-219 MIMAT0001506 Anopheles gambiae miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>ame-miR-219 MIMAT0001478 Apis mellifera miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dre-miR-219-5p MIMAT0001286 Danio rerio miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dps-miR-219 MIMAT0001234 Drosophila pseudoobscura miR-219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>gga-miR-219a MIMAT0001170 Gallus gallus miR-219a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>rno-miR-219a-5p MIMAT0000889 Rattus norvegicus miR-219a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>mmu-miR-219a-5p MIMAT0000664 Mus musculus miR-219a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>dme-miR-219-5p MIMAT0000335 Drosophila melanogaster miR-219-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
>hsa-miR-219a-5p MIMAT0000276 Homo sapiens miR-219a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgattgt 8
|||||||
Sbjct: 1 tgattgt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 437
Number of extensions: 352
Number of successful extensions: 339
Number of sequences better than 100.0: 84
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 84
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
