BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s54
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tae-miR530 MIMAT0036987 Triticum aestivum miR530 14 27
chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p 14 27
tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p 14 27
hbr-miR9386 MIMAT0035235 Hevea brasiliensis miR9386 14 27
efu-miR-9186n MIMAT0034962 Eptesicus fuscus miR-9186n 14 27
eca-miR-9154 MIMAT0034730 Equus caballus miR-9154 14 27
cfa-miR-8893 MIMAT0034401 Canis familiaris miR-8893 14 27
cfa-miR-6516 MIMAT0034393 Canis familiaris miR-6516 14 27
ssa-miR-93a-2-3p MIMAT0032715 Salmo salar miR-93a-2-3p 14 27
ssa-miR-93a-3p MIMAT0032714 Salmo salar miR-93a-3p 14 27
ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p 14 27
ssa-miR-17-3p MIMAT0032416 Salmo salar miR-17-3p 14 27
bta-miR-6516 MIMAT0030443 Bos taurus miR-6516 14 27
hsa-miR-6516-5p MIMAT0030417 Homo sapiens miR-6516-5p 14 27
hsa-miR-6807-3p MIMAT0027515 Homo sapiens miR-6807-3p 14 27
gga-miR-6600-3p MIMAT0025694 Gallus gallus miR-6600-3p 14 27
mmu-miR-6516-5p MIMAT0027343 Mus musculus miR-6516-5p 14 27
mmu-miR-6418-3p MIMAT0025174 Mus musculus miR-6418-3p 14 27
hsa-miR-4418 MIMAT0018930 Homo sapiens miR-4418 14 27
tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p 14 27
bmo-miR-2785 MIMAT0013681 Bombyx mori miR-2785 14 27
bta-miR-2440 MIMAT0012015 Bos taurus miR-2440 14 27
bta-miR-2416 MIMAT0011980 Bos taurus miR-2416 14 27
gga-miR-2128 MIMAT0011204 Gallus gallus miR-2128 14 27
mml-miR-143-5p MIMAT0026823 Macaca mulatta miR-143-5p 14 27
gga-miR-1711 MIMAT0007606 Gallus gallus miR-1711 14 27
oan-miR-1421o-3p MIMAT0007077 Ornithorhynchus anatinus miR-1421o-3p 14 27
oan-miR-1421j-3p MIMAT0026757 Ornithorhynchus anatinus miR-1421j-3p 14 27
oan-miR-1421h-3p MIMAT0006978 Ornithorhynchus anatinus miR-1421h-3p 14 27
oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p 14 27
mdo-miR-143-5p MIMAT0026668 Monodelphis domestica miR-143-5p 14 27
mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p 14 27
dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p 14 27
>tae-miR530 MIMAT0036987 Triticum aestivum miR530
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 8 ttgcagt 2
>tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 1 ttgcagt 7
>hbr-miR9386 MIMAT0035235 Hevea brasiliensis miR9386
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>efu-miR-9186n MIMAT0034962 Eptesicus fuscus miR-9186n
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>eca-miR-9154 MIMAT0034730 Equus caballus miR-9154
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>cfa-miR-8893 MIMAT0034401 Canis familiaris miR-8893
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 7 tgcagtg 1
>cfa-miR-6516 MIMAT0034393 Canis familiaris miR-6516
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>ssa-miR-93a-2-3p MIMAT0032715 Salmo salar miR-93a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>ssa-miR-93a-3p MIMAT0032714 Salmo salar miR-93a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>ssa-miR-17-3p MIMAT0032416 Salmo salar miR-17-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 2 tgcagtg 8
>bta-miR-6516 MIMAT0030443 Bos taurus miR-6516
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>hsa-miR-6516-5p MIMAT0030417 Homo sapiens miR-6516-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>hsa-miR-6807-3p MIMAT0027515 Homo sapiens miR-6807-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 7 tgcagtg 1
>gga-miR-6600-3p MIMAT0025694 Gallus gallus miR-6600-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>mmu-miR-6516-5p MIMAT0027343 Mus musculus miR-6516-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgcagt 7
|||||||
Sbjct: 2 ttgcagt 8
>mmu-miR-6418-3p MIMAT0025174 Mus musculus miR-6418-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>hsa-miR-4418 MIMAT0018930 Homo sapiens miR-4418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 7 tgcagtg 1
>tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 8 ttgcagt 2
>bmo-miR-2785 MIMAT0013681 Bombyx mori miR-2785
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>bta-miR-2440 MIMAT0012015 Bos taurus miR-2440
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>bta-miR-2416 MIMAT0011980 Bos taurus miR-2416
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>gga-miR-2128 MIMAT0011204 Gallus gallus miR-2128
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 1 tgcagtg 7
>mml-miR-143-5p MIMAT0026823 Macaca mulatta miR-143-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 2 tgcagtg 8
>gga-miR-1711 MIMAT0007606 Gallus gallus miR-1711
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 2 tgcagtg 8
>oan-miR-1421o-3p MIMAT0007077 Ornithorhynchus anatinus
miR-1421o-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 7 tgcagtg 1
>oan-miR-1421j-3p MIMAT0026757 Ornithorhynchus anatinus
miR-1421j-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 8 tgcagtg 2
>oan-miR-1421h-3p MIMAT0006978 Ornithorhynchus anatinus
miR-1421h-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcagtg 8
|||||||
Sbjct: 7 tgcagtg 1
>oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>mdo-miR-143-5p MIMAT0026668 Monodelphis domestica miR-143-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcagtg 8
|||||||
Sbjct: 2 tgcagtg 8
>mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
>dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgcagt 7
|||||||
Sbjct: 7 ttgcagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 508
Number of extensions: 475
Number of successful extensions: 412
Number of sequences better than 100.0: 33
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 33
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
