BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b9
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9                     16   6.9  
ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p        14      27
bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon miR7724b-3p       14      27
bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon miR7724a-3p       14      27
mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p         14      27
hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p                  14      27
dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura miR-2568b-3p    14      27
bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r                        14      27
mtr-miR166d MIMAT0011068 Medicago truncatula miR166d                   14      27
>bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttggcccg 8
         ||||||||
Sbjct: 1 ttggcccg 8
>ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttggccc 7
         |||||||
Sbjct: 1 ttggccc 7
>bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon
         miR7724b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttggccc 7
         |||||||
Sbjct: 1 ttggccc 7
>bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon
         miR7724a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttggccc 7
         |||||||
Sbjct: 1 ttggccc 7
>mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttggccc 7
         |||||||
Sbjct: 8 ttggccc 2
>hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tggcccg 8
         |||||||
Sbjct: 1 tggcccg 7
>dps-miR-2568b-3p MIMAT0012409 Drosophila pseudoobscura
         miR-2568b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tggcccg 8
         |||||||
Sbjct: 2 tggcccg 8
>bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttggccc 7
         |||||||
Sbjct: 1 ttggccc 7
>mtr-miR166d MIMAT0011068 Medicago truncatula miR166d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tggcccg 8
         |||||||
Sbjct: 8 tggcccg 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 101
Number of successful extensions: 67
Number of sequences better than 100.0: 9
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)