BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12 16 6.9
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p 14 27
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p 14 27
mml-miR-3122 MIMAT0024340 Macaca mulatta miR-3122 14 27
rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341 14 27
bdi-miR5178-5p MIMAT0027083 Brachypodium distachyon miR5178-5p 14 27
osa-miR3981-5p MIMAT0019683 Oryza sativa miR3981-5p 14 27
hsa-miR-4433a-5p MIMAT0020956 Homo sapiens miR-4433a-5p 14 27
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p 14 27
ppy-miR-1302 MIMAT0016222 Pongo pygmaeus miR-1302 14 27
hsa-miR-3122 MIMAT0014984 Homo sapiens miR-3122 14 27
eca-miR-1302d MIMAT0012969 Equus caballus miR-1302d 14 27
eca-miR-1302b MIMAT0012934 Equus caballus miR-1302b 14 27
eca-miR-1302 MIMAT0012907 Equus caballus miR-1302 14 27
mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963 14 27
ptr-miR-1302 MIMAT0008021 Pan troglodytes miR-1302 14 27
gga-miR-1670 MIMAT0007554 Gallus gallus miR-1670 14 27
hsa-miR-1302 MIMAT0005890 Homo sapiens miR-1302 14 27
ppt-miR893 MIMAT0004364 Physcomitrella patens miR893 14 27
>hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttgggacg 8
||||||||
Sbjct: 1 ttgggacg 8
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>mml-miR-3122 MIMAT0024340 Macaca mulatta miR-3122
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>rmi-miR-5341 MIMAT0021414 Rhipicephalus microplus miR-5341
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggacg 8
|||||||
Sbjct: 1 tgggacg 7
>bdi-miR5178-5p MIMAT0027083 Brachypodium distachyon miR5178-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>osa-miR3981-5p MIMAT0019683 Oryza sativa miR3981-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggacg 8
|||||||
Sbjct: 1 tgggacg 7
>hsa-miR-4433a-5p MIMAT0020956 Homo sapiens miR-4433a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgggacg 8
|||||||
Sbjct: 7 tgggacg 1
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>ppy-miR-1302 MIMAT0016222 Pongo pygmaeus miR-1302
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>hsa-miR-3122 MIMAT0014984 Homo sapiens miR-3122
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
>eca-miR-1302d MIMAT0012969 Equus caballus miR-1302d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>eca-miR-1302b MIMAT0012934 Equus caballus miR-1302b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>eca-miR-1302 MIMAT0012907 Equus caballus miR-1302
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>mmu-miR-1963 MIMAT0009436 Mus musculus miR-1963
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggacg 8
|||||||
Sbjct: 1 tgggacg 7
>ptr-miR-1302 MIMAT0008021 Pan troglodytes miR-1302
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>gga-miR-1670 MIMAT0007554 Gallus gallus miR-1670
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggacg 8
|||||||
Sbjct: 2 tgggacg 8
>hsa-miR-1302 MIMAT0005890 Homo sapiens miR-1302
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 1 ttgggac 7
>ppt-miR893 MIMAT0004364 Physcomitrella patens miR893
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggac 7
|||||||
Sbjct: 2 ttgggac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 180
Number of extensions: 160
Number of successful extensions: 116
Number of sequences better than 100.0: 19
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
