BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-30
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9223a MIMAT0034816 Eptesicus fuscus miR-9223a 14 20
bdi-miR5163b-5p MIMAT0030097 Brachypodium distachyon miR5163b-5p 14 20
mml-miR-7202-5p MIMAT0028368 Macaca mulatta miR-7202-5p 14 20
mmu-miR-7014-5p MIMAT0027932 Mus musculus miR-7014-5p 14 20
aly-miR774b-3p MIMAT0017700 Arabidopsis lyrata miR774b-3p 14 20
bmo-miR-3367 MIMAT0015553 Bombyx mori miR-3367 14 20
ame-miR-3718c MIMAT0037268 Apis mellifera miR-3718c 12 80
efu-miR-9203a MIMAT0034789 Eptesicus fuscus miR-9203a 12 80
eca-miR-8931 MIMAT0034459 Equus caballus miR-8931 12 80
cfa-miR-8901 MIMAT0034411 Canis familiaris miR-8901 12 80
cfa-miR-8883 MIMAT0034385 Canis familiaris miR-8883 12 80
pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a 12 80
sma-miR-8457-5p MIMAT0033626 Schistosoma mansoni miR-8457-5p 12 80
str-miR-7880d-5p MIMAT0033315 Strongyloides ratti miR-7880d-5p 12 80
mmu-miR-8114 MIMAT0031420 Mus musculus miR-8114 12 80
stu-miR8030-5p MIMAT0030934 Solanum tuberosum miR8030-5p 12 80
ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836 12 80
ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837 12 80
cbn-miR-7614 MIMAT0029652 Caenorhabditis brenneri miR-7614 12 80
cbr-miR-7580 MIMAT0029581 Caenorhabditis briggsae miR-7580 12 80
mdo-miR-7386n-5p MIMAT0028864 Monodelphis domestica miR-7386n-5p 12 80
mdo-miR-1544d-5p MIMAT0028754 Monodelphis domestica miR-1544d-5p 12 80
mdo-miR-1544c-5p MIMAT0028746 Monodelphis domestica miR-1544c-5p 12 80
mdo-miR-7363-3p MIMAT0028739 Monodelphis domestica miR-7363-3p 12 80
mdo-miR-219-2-3p MIMAT0031109 Monodelphis domestica miR-219-2-3p 12 80
sbi-miR6230-5p MIMAT0026436 Sorghum bicolor miR6230-5p 12 80
mmu-miR-7078-5p MIMAT0028062 Mus musculus miR-7078-5p 12 80
mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p 12 80
mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p 12 80
hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p 12 80
hsa-miR-6776-5p MIMAT0027452 Homo sapiens miR-6776-5p 12 80
hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p 12 80
hsa-miR-6748-5p MIMAT0027396 Homo sapiens miR-6748-5p 12 80
hsa-miR-6745 MIMAT0027391 Homo sapiens miR-6745 12 80
gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p 12 80
gga-miR-6610-3p MIMAT0025705 Gallus gallus miR-6610-3p 12 80
tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789 12 80
bna-miR6030 MIMAT0023650 Brassica napus miR6030 12 80
nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p 12 80
stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p 12 80
gma-miR4416b MIMAT0023177 Glycine max miR4416b 12 80
hsa-miR-1295b-5p MIMAT0022293 Homo sapiens miR-1295b-5p 12 80
sly-miR482e-5p MIMAT0020765 Solanum lycopersicum miR482e-5p 12 80
ath-miR5028 MIMAT0020534 Arabidopsis thaliana miR5028 12 80
pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626 12 80
ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516 12 80
ppy-miR-1293 MIMAT0016215 Pongo pygmaeus miR-1293 12 80
aly-miR851-3p MIMAT0017692 Arabidopsis lyrata miR851-3p 12 80
cqu-miR-279-5p MIMAT0014417 Culex quinquefasciatus miR-279-5p 12 80
bta-miR-669 MIMAT0013838 Bos taurus miR-669 12 80
crm-miR-2230-3p MIMAT0011630 Caenorhabditis remanei miR-2230-3p 12 80
tca-miR-279b-5p MIMAT0019181 Tribolium castaneum miR-279b-5p 12 80
ptr-miR-1293 MIMAT0008012 Pan troglodytes miR-1293 12 80
gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789 12 80
mdo-miR-1544a-5p MIMAT0006144 Monodelphis domestica miR-1544a-5p 12 80
oan-miR-1412 MIMAT0007232 Ornithorhynchus anatinus miR-1412 12 80
oan-miR-1369 MIMAT0007034 Ornithorhynchus anatinus miR-1369 12 80
hsa-miR-1293 MIMAT0005883 Homo sapiens miR-1293 12 80
dme-miR-954-5p MIMAT0005465 Drosophila melanogaster miR-954-5p 12 80
ath-miR851-3p MIMAT0004274 Arabidopsis thaliana miR851-3p 12 80
ath-miR823 MIMAT0004240 Arabidopsis thaliana miR823 12 80
mmu-miR-698-5p MIMAT0022930 Mus musculus miR-698-5p 12 80
dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p 12 80
cel-miR-37-5p MIMAT0015094 Caenorhabditis elegans miR-37-5p 12 80
>efu-miR-9223a MIMAT0034816 Eptesicus fuscus miR-9223a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggtg 7
|||||||
Sbjct: 1 ttgggtg 7
>bdi-miR5163b-5p MIMAT0030097 Brachypodium distachyon
miR5163b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgggtg 7
|||||||
Sbjct: 7 ttgggtg 1
>mml-miR-7202-5p MIMAT0028368 Macaca mulatta miR-7202-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggtg 7
|||||||
Sbjct: 1 ttgggtg 7
>mmu-miR-7014-5p MIMAT0027932 Mus musculus miR-7014-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggtg 7
|||||||
Sbjct: 1 ttgggtg 7
>aly-miR774b-3p MIMAT0017700 Arabidopsis lyrata miR774b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgggtg 7
|||||||
Sbjct: 7 ttgggtg 1
>bmo-miR-3367 MIMAT0015553 Bombyx mori miR-3367
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgggtg 7
|||||||
Sbjct: 2 ttgggtg 8
>ame-miR-3718c MIMAT0037268 Apis mellifera miR-3718c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>efu-miR-9203a MIMAT0034789 Eptesicus fuscus miR-9203a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>eca-miR-8931 MIMAT0034459 Equus caballus miR-8931
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>cfa-miR-8901 MIMAT0034411 Canis familiaris miR-8901
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 7 tgggtg 2
>cfa-miR-8883 MIMAT0034385 Canis familiaris miR-8883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>sma-miR-8457-5p MIMAT0033626 Schistosoma mansoni miR-8457-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>str-miR-7880d-5p MIMAT0033315 Strongyloides ratti miR-7880d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>mmu-miR-8114 MIMAT0031420 Mus musculus miR-8114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 7 tgggtg 2
>stu-miR8030-5p MIMAT0030934 Solanum tuberosum miR8030-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 1 ttgggt 6
>ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>cbn-miR-7614 MIMAT0029652 Caenorhabditis brenneri miR-7614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgggt 6
||||||
Sbjct: 8 ttgggt 3
>cbr-miR-7580 MIMAT0029581 Caenorhabditis briggsae miR-7580
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgggt 6
||||||
Sbjct: 8 ttgggt 3
>mdo-miR-7386n-5p MIMAT0028864 Monodelphis domestica
miR-7386n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>mdo-miR-1544d-5p MIMAT0028754 Monodelphis domestica
miR-1544d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 8 tgggtg 3
>mdo-miR-1544c-5p MIMAT0028746 Monodelphis domestica
miR-1544c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 8 tgggtg 3
>mdo-miR-7363-3p MIMAT0028739 Monodelphis domestica miR-7363-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgggt 6
||||||
Sbjct: 8 ttgggt 3
>mdo-miR-219-2-3p MIMAT0031109 Monodelphis domestica
miR-219-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>sbi-miR6230-5p MIMAT0026436 Sorghum bicolor miR6230-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>mmu-miR-7078-5p MIMAT0028062 Mus musculus miR-7078-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 6 tgggtg 1
>mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 6 tgggtg 1
>hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 1 ttgggt 6
>hsa-miR-6776-5p MIMAT0027452 Homo sapiens miR-6776-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>hsa-miR-6748-5p MIMAT0027396 Homo sapiens miR-6748-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>hsa-miR-6745 MIMAT0027391 Homo sapiens miR-6745
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>gga-miR-6610-3p MIMAT0025705 Gallus gallus miR-6610-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>bna-miR6030 MIMAT0023650 Brassica napus miR6030
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 8 tgggtg 3
>nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>gma-miR4416b MIMAT0023177 Glycine max miR4416b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>hsa-miR-1295b-5p MIMAT0022293 Homo sapiens miR-1295b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 6 tgggtg 1
>sly-miR482e-5p MIMAT0020765 Solanum lycopersicum miR482e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>ath-miR5028 MIMAT0020534 Arabidopsis thaliana miR5028
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgggt 6
||||||
Sbjct: 3 ttgggt 8
>pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>ppy-miR-1293 MIMAT0016215 Pongo pygmaeus miR-1293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>aly-miR851-3p MIMAT0017692 Arabidopsis lyrata miR851-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>cqu-miR-279-5p MIMAT0014417 Culex quinquefasciatus miR-279-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>bta-miR-669 MIMAT0013838 Bos taurus miR-669
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>crm-miR-2230-3p MIMAT0011630 Caenorhabditis remanei miR-2230-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgggt 6
||||||
Sbjct: 8 ttgggt 3
>tca-miR-279b-5p MIMAT0019181 Tribolium castaneum miR-279b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>ptr-miR-1293 MIMAT0008012 Pan troglodytes miR-1293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>mdo-miR-1544a-5p MIMAT0006144 Monodelphis domestica
miR-1544a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtg 7
||||||
Sbjct: 8 tgggtg 3
>oan-miR-1412 MIMAT0007232 Ornithorhynchus anatinus miR-1412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>oan-miR-1369 MIMAT0007034 Ornithorhynchus anatinus miR-1369
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>hsa-miR-1293 MIMAT0005883 Homo sapiens miR-1293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>dme-miR-954-5p MIMAT0005465 Drosophila melanogaster miR-954-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>ath-miR851-3p MIMAT0004274 Arabidopsis thaliana miR851-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>ath-miR823 MIMAT0004240 Arabidopsis thaliana miR823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 1 tgggtg 6
>mmu-miR-698-5p MIMAT0022930 Mus musculus miR-698-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
>cel-miR-37-5p MIMAT0015094 Caenorhabditis elegans miR-37-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtg 7
||||||
Sbjct: 3 tgggtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 93
Number of extensions: 87
Number of successful extensions: 64
Number of sequences better than 100.0: 64
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 64
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)