BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s66
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus miR-8282a-5p 14 20
mmu-miR-6934-5p MIMAT0027768 Mus musculus miR-6934-5p 14 20
ath-miR5665 MIMAT0022443 Arabidopsis thaliana miR5665 14 20
sbi-miR5385 MIMAT0021683 Sorghum bicolor miR5385 14 20
bmo-miR-3278 MIMAT0015463 Bombyx mori miR-3278 14 20
hma-miR-3005 MIMAT0014672 Hydra magnipapillata miR-3005 14 20
rno-miR-181a-2-3p MIMAT0017138 Rattus norvegicus miR-181a-2-3p 14 20
ame-miR-9888 MIMAT0037293 Apis mellifera miR-9888 12 80
ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p 12 80
chi-miR-876-3p MIMAT0036299 Capra hircus miR-876-3p 12 80
chi-miR-329a-5p MIMAT0036140 Capra hircus miR-329a-5p 12 80
rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896 12 80
dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p 12 80
gsa-miR-9401-3p MIMAT0035351 Gyrodactylus salaris miR-9401-3p 12 80
efu-miR-9186i MIMAT0035144 Eptesicus fuscus miR-9186i 12 80
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257 12 80
gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759 12 80
gra-miR8666 MIMAT0034037 Gossypium raimondii miR8666 12 80
sma-miR-8439-3p MIMAT0033583 Schistosoma mansoni miR-8439-3p 12 80
prd-miR-9b-5p MIMAT0030576 Panagrellus redivivus miR-9b-5p 12 80
hsa-miR-7855-5p MIMAT0030430 Homo sapiens miR-7855-5p 12 80
lja-miR7546 MIMAT0029373 Lotus japonicus miR7546 12 80
gga-miR-7443-5p MIMAT0029040 Gallus gallus miR-7443-5p 12 80
mml-miR-7171-3p MIMAT0028277 Macaca mulatta miR-7171-3p 12 80
mdm-miR7124b MIMAT0026055 Malus domestica miR7124b 12 80
mdm-miR7124a MIMAT0026054 Malus domestica miR7124a 12 80
mmu-miR-6769b-5p MIMAT0028040 Mus musculus miR-6769b-5p 12 80
hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p 12 80
hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p 12 80
gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p 12 80
gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p 12 80
gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p 12 80
rno-miR-6331 MIMAT0025070 Rattus norvegicus miR-6331 12 80
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971 12 80
hbr-miR6175 MIMAT0024796 Hevea brasiliensis miR6175 12 80
hbr-miR6168 MIMAT0024786 Hevea brasiliensis miR6168 12 80
nta-miR171a MIMAT0024686 Nicotiana tabacum miR171a 12 80
ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654 12 80
gma-miR5679 MIMAT0022467 Glycine max miR5679 12 80
osa-miR5073 MIMAT0020555 Oryza sativa miR5073 12 80
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015 12 80
hsa-miR-4733-3p MIMAT0019858 Homo sapiens miR-4733-3p 12 80
oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p 12 80
hsa-miR-4456 MIMAT0018978 Homo sapiens miR-4456 12 80
tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p 12 80
tca-miR-9d-5p MIMAT0018748 Tribolium castaneum miR-9d-5p 12 80
ame-miR-971 MIMAT0018544 Apis mellifera miR-971 12 80
ppy-miR-876-3p MIMAT0016116 Pongo pygmaeus miR-876-3p 12 80
ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p 12 80
ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541 12 80
aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p 12 80
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971 12 80
zma-miR171n-5p MIMAT0015332 Zea mays miR171n-5p 12 80
bta-miR-2898 MIMAT0013856 Bos taurus miR-2898 12 80
eca-miR-541 MIMAT0013168 Equus caballus miR-541 12 80
eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p 12 80
eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c 12 80
mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p 12 80
bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c 12 80
cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711 12 80
dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura miR-2548-5p 12 80
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p 12 80
crm-miR-79-5p MIMAT0011555 Caenorhabditis remanei miR-79-5p 12 80
aqu-miR-2021-3p MIMAT0009754 Amphimedon queenslandica miR-2021-3p 12 80
bta-miR-541 MIMAT0009343 Bos taurus miR-541 12 80
ptr-miR-876 MIMAT0008327 Pan troglodytes miR-876 12 80
sly-miR171c MIMAT0007924 Solanum lycopersicum miR171c 12 80
sly-miR1918 MIMAT0007910 Solanum lycopersicum miR1918 12 80
cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838 12 80
mml-miR-876-3p MIMAT0006520 Macaca mulatta miR-876-3p 12 80
mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p 12 80
gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594 12 80
gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p 12 80
ppt-miR1038-3p MIMAT0005147 Physcomitrella patens miR1038-3p 12 80
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p 12 80
hsa-miR-876-3p MIMAT0004925 Homo sapiens miR-876-3p 12 80
hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p 12 80
hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p 12 80
zma-miR171c-5p MIMAT0015198 Zea mays miR171c-5p 12 80
cel-miR-79-5p MIMAT0020322 Caenorhabditis elegans miR-79-5p 12 80
>ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus
miR-8282a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttggtgg 7
|||||||
Sbjct: 7 ttggtgg 1
>mmu-miR-6934-5p MIMAT0027768 Mus musculus miR-6934-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggtgg 7
|||||||
Sbjct: 1 ttggtgg 7
>ath-miR5665 MIMAT0022443 Arabidopsis thaliana miR5665
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggtgg 7
|||||||
Sbjct: 1 ttggtgg 7
>sbi-miR5385 MIMAT0021683 Sorghum bicolor miR5385
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttggtgg 7
|||||||
Sbjct: 8 ttggtgg 2
>bmo-miR-3278 MIMAT0015463 Bombyx mori miR-3278
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggtgg 7
|||||||
Sbjct: 1 ttggtgg 7
>hma-miR-3005 MIMAT0014672 Hydra magnipapillata miR-3005
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggtgg 7
|||||||
Sbjct: 1 ttggtgg 7
>rno-miR-181a-2-3p MIMAT0017138 Rattus norvegicus miR-181a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttggtgg 7
|||||||
Sbjct: 8 ttggtgg 2
>ame-miR-9888 MIMAT0037293 Apis mellifera miR-9888
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>chi-miR-876-3p MIMAT0036299 Capra hircus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>chi-miR-329a-5p MIMAT0036140 Capra hircus miR-329a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>gsa-miR-9401-3p MIMAT0035351 Gyrodactylus salaris miR-9401-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>efu-miR-9186i MIMAT0035144 Eptesicus fuscus miR-9186i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gra-miR8666 MIMAT0034037 Gossypium raimondii miR8666
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>sma-miR-8439-3p MIMAT0033583 Schistosoma mansoni miR-8439-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>prd-miR-9b-5p MIMAT0030576 Panagrellus redivivus miR-9b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>hsa-miR-7855-5p MIMAT0030430 Homo sapiens miR-7855-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>lja-miR7546 MIMAT0029373 Lotus japonicus miR7546
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>gga-miR-7443-5p MIMAT0029040 Gallus gallus miR-7443-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mml-miR-7171-3p MIMAT0028277 Macaca mulatta miR-7171-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mdm-miR7124b MIMAT0026055 Malus domestica miR7124b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggtg 6
||||||
Sbjct: 6 ttggtg 1
>mdm-miR7124a MIMAT0026054 Malus domestica miR7124a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggtg 6
||||||
Sbjct: 6 ttggtg 1
>mmu-miR-6769b-5p MIMAT0028040 Mus musculus miR-6769b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>rno-miR-6331 MIMAT0025070 Rattus norvegicus miR-6331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>hbr-miR6175 MIMAT0024796 Hevea brasiliensis miR6175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hbr-miR6168 MIMAT0024786 Hevea brasiliensis miR6168
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>nta-miR171a MIMAT0024686 Nicotiana tabacum miR171a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gma-miR5679 MIMAT0022467 Glycine max miR5679
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>osa-miR5073 MIMAT0020555 Oryza sativa miR5073
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>hsa-miR-4733-3p MIMAT0019858 Homo sapiens miR-4733-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 6 tggtgg 1
>oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-4456 MIMAT0018978 Homo sapiens miR-4456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>tca-miR-9d-5p MIMAT0018748 Tribolium castaneum miR-9d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>ppy-miR-876-3p MIMAT0016116 Pongo pygmaeus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggtg 6
||||||
Sbjct: 6 ttggtg 1
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>zma-miR171n-5p MIMAT0015332 Zea mays miR171n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>bta-miR-2898 MIMAT0013856 Bos taurus miR-2898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>eca-miR-541 MIMAT0013168 Equus caballus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 8 tggtgg 3
>mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura
miR-2548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>crm-miR-79-5p MIMAT0011555 Caenorhabditis remanei miR-79-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>aqu-miR-2021-3p MIMAT0009754 Amphimedon queenslandica
miR-2021-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>bta-miR-541 MIMAT0009343 Bos taurus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ptr-miR-876 MIMAT0008327 Pan troglodytes miR-876
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>sly-miR171c MIMAT0007924 Solanum lycopersicum miR171c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>sly-miR1918 MIMAT0007910 Solanum lycopersicum miR1918
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 6 tggtgg 1
>mml-miR-876-3p MIMAT0006520 Macaca mulatta miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>ppt-miR1038-3p MIMAT0005147 Physcomitrella patens miR1038-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 1 ttggtg 6
>hsa-miR-876-3p MIMAT0004925 Homo sapiens miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>zma-miR171c-5p MIMAT0015198 Zea mays miR171c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
>cel-miR-79-5p MIMAT0020322 Caenorhabditis elegans miR-79-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggtg 6
||||||
Sbjct: 3 ttggtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 106
Number of extensions: 99
Number of successful extensions: 80
Number of sequences better than 100.0: 80
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 80
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
