BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p 14 20
bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p 14 20
ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489 14 20
dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p 14 20
osa-miR5827 MIMAT0023301 Oryza sativa miR5827 14 20
vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p 14 20
bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p 14 20
mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p 14 20
oha-miR-7-2-3p MIMAT0036947 Ophiophagus hannah miR-7-2-3p 12 80
oha-miR-7-1-3p MIMAT0036946 Ophiophagus hannah miR-7-1-3p 12 80
ocu-miR-367-5p MIMAT0036324 Oryctolagus cuniculus miR-367-5p 12 80
bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p 12 80
efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293 12 80
efu-miR-9217 MIMAT0034809 Eptesicus fuscus miR-9217 12 80
efu-miR-9187 MIMAT0034767 Eptesicus fuscus miR-9187 12 80
eca-miR-9079 MIMAT0034624 Equus caballus miR-9079 12 80
eca-miR-9006 MIMAT0034546 Equus caballus miR-9006 12 80
sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p 12 80
ssa-miR-7a-7-3p MIMAT0032700 Salmo salar miR-7a-7-3p 12 80
ssa-miR-7a-6-3p MIMAT0032699 Salmo salar miR-7a-6-3p 12 80
ssa-miR-7a-5-3p MIMAT0032698 Salmo salar miR-7a-5-3p 12 80
ssa-miR-7a-4-3p MIMAT0032697 Salmo salar miR-7a-4-3p 12 80
ssa-miR-7a-3-3p MIMAT0032696 Salmo salar miR-7a-3-3p 12 80
ssa-miR-7a-2-3p MIMAT0032695 Salmo salar miR-7a-2-3p 12 80
ssa-miR-7a-1-3p MIMAT0032694 Salmo salar miR-7a-1-3p 12 80
ssa-miR-196a-3-3p MIMAT0032456 Salmo salar miR-196a-3-3p 12 80
bbe-miR-2072-5p MIMAT0031640 Branchiostoma belcheri miR-2072-5p 12 80
bbe-miR-2067-5p MIMAT0031631 Branchiostoma belcheri miR-2067-5p 12 80
stu-miR172e-5p MIMAT0031294 Solanum tuberosum miR172e-5p 12 80
stu-miR6149-5p MIMAT0030963 Solanum tuberosum miR6149-5p 12 80
bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p 12 80
lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p 12 80
aja-miR-7 MIMAT0031143 Artibeus jamaicensis miR-7 12 80
mdo-miR-7388b-5p MIMAT0028872 Monodelphis domestica miR-7388b-5p 12 80
mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p 12 80
hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p 12 80
gga-miR-6560-5p MIMAT0025627 Gallus gallus miR-6560-5p 12 80
gga-miR-6552-3p MIMAT0025612 Gallus gallus miR-6552-3p 12 80
hco-miR-5956 MIMAT0023459 Haemonchus contortus miR-5956 12 80
sha-miR-7 MIMAT0022793 Sarcophilus harrisii miR-7 12 80
aca-miR-5452-3p MIMAT0022076 Anolis carolinensis miR-5452-3p 12 80
aca-miR-7-2-3p MIMAT0021985 Anolis carolinensis miR-7-2-3p 12 80
aca-miR-7-1-3p MIMAT0021984 Anolis carolinensis miR-7-1-3p 12 80
aca-miR-21-3p MIMAT0021866 Anolis carolinensis miR-21-3p 12 80
mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234 12 80
bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p 12 80
ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p 12 80
dme-miR-4987-5p MIMAT0020225 Drosophila melanogaster miR-4987-5p 12 80
dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster miR-4973-3p 12 80
dme-miR-4968-3p MIMAT0032118 Drosophila melanogaster miR-4968-3p 12 80
spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus miR-4854 12 80
hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p 12 80
hsa-miR-4684-3p MIMAT0019770 Homo sapiens miR-4684-3p 12 80
pma-miR-7a-3p MIMAT0019371 Petromyzon marinus miR-7a-3p 12 80
gma-miR4412-5p MIMAT0020954 Glycine max miR4412-5p 12 80
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p 12 80
tca-miR-3839-3p MIMAT0018723 Tribolium castaneum miR-3839-3p 12 80
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244 12 80
cin-miR-4093-3p MIMAT0016673 Ciona intestinalis miR-4093-3p 12 80
cin-miR-4001c-3p MIMAT0016451 Ciona intestinalis miR-4001c-3p 12 80
aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p 12 80
aly-miR172d-5p MIMAT0017527 Arabidopsis lyrata miR172d-5p 12 80
tgu-miR-7-4-3p MIMAT0031020 Taeniopygia guttata miR-7-4-3p 12 80
tgu-miR-7-1-3p MIMAT0014632 Taeniopygia guttata miR-7-1-3p 12 80
dme-miR-2491-3p MIMAT0020912 Drosophila melanogaster miR-2491-3p 12 80
bta-miR-2434 MIMAT0012006 Bos taurus miR-2434 12 80
bfl-miR-2072-5p MIMAT0010000 Branchiostoma floridae miR-2072-5p 12 80
cfa-miR-367 MIMAT0009859 Canis familiaris miR-367 12 80
nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p 12 80
cfa-miR-409 MIMAT0006726 Canis familiaris miR-409 12 80
gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p 12 80
cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p 12 80
oan-miR-7-1-3p MIMAT0009195 Ornithorhynchus anatinus miR-7-1-3p 12 80
oan-miR-7-3p MIMAT0006987 Ornithorhynchus anatinus miR-7-3p 12 80
tae-miR1134 MIMAT0005369 Triticum aestivum miR1134 12 80
ppt-miR902l-5p MIMAT0005087 Physcomitrella patens miR902l-5p 12 80
ppt-miR902k-5p MIMAT0005085 Physcomitrella patens miR902k-5p 12 80
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p 12 80
gga-miR-21-3p MIMAT0026643 Gallus gallus miR-21-3p 12 80
rno-miR-409a-3p MIMAT0003205 Rattus norvegicus miR-409a-3p 12 80
mmu-miR-367-5p MIMAT0017214 Mus musculus miR-367-5p 12 80
ath-miR172d-5p MIMAT0031901 Arabidopsis thaliana miR172d-5p 12 80
rno-miR-7a-2-3p MIMAT0017091 Rattus norvegicus miR-7a-2-3p 12 80
hsa-miR-367-5p MIMAT0004686 Homo sapiens miR-367-5p 12 80
mmu-miR-7b-3p MIMAT0017071 Mus musculus miR-7b-3p 12 80
mmu-miR-7a-2-3p MIMAT0017070 Mus musculus miR-7a-2-3p 12 80
mmu-miR-7a-1-3p MIMAT0004670 Mus musculus miR-7a-1-3p 12 80
hsa-miR-196a-3p MIMAT0004562 Homo sapiens miR-196a-3p 12 80
hsa-miR-7-2-3p MIMAT0004554 Homo sapiens miR-7-2-3p 12 80
hsa-miR-7-1-3p MIMAT0004553 Homo sapiens miR-7-1-3p 12 80
>sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgttgc 7
|||||||
Sbjct: 7 ttgttgc 1
>bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgttgc 7
|||||||
Sbjct: 8 ttgttgc 2
>ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgttgc 7
|||||||
Sbjct: 2 ttgttgc 8
>dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgttgc 7
|||||||
Sbjct: 2 ttgttgc 8
>osa-miR5827 MIMAT0023301 Oryza sativa miR5827
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttgttgc 7
|||||||
Sbjct: 2 ttgttgc 8
>vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgttgc 7
|||||||
Sbjct: 7 ttgttgc 1
>bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgttgc 7
|||||||
Sbjct: 8 ttgttgc 2
>mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttgttgc 7
|||||||
Sbjct: 8 ttgttgc 2
>oha-miR-7-2-3p MIMAT0036947 Ophiophagus hannah miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>oha-miR-7-1-3p MIMAT0036946 Ophiophagus hannah miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ocu-miR-367-5p MIMAT0036324 Oryctolagus cuniculus miR-367-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 1 ttgttg 6
>efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 6 tgttgc 1
>efu-miR-9217 MIMAT0034809 Eptesicus fuscus miR-9217
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>efu-miR-9187 MIMAT0034767 Eptesicus fuscus miR-9187
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>eca-miR-9079 MIMAT0034624 Equus caballus miR-9079
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>eca-miR-9006 MIMAT0034546 Equus caballus miR-9006
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-7-3p MIMAT0032700 Salmo salar miR-7a-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-6-3p MIMAT0032699 Salmo salar miR-7a-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-5-3p MIMAT0032698 Salmo salar miR-7a-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-4-3p MIMAT0032697 Salmo salar miR-7a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-3-3p MIMAT0032696 Salmo salar miR-7a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-2-3p MIMAT0032695 Salmo salar miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-7a-1-3p MIMAT0032694 Salmo salar miR-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ssa-miR-196a-3-3p MIMAT0032456 Salmo salar miR-196a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>bbe-miR-2072-5p MIMAT0031640 Branchiostoma belcheri miR-2072-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 7 tgttgc 2
>bbe-miR-2067-5p MIMAT0031631 Branchiostoma belcheri miR-2067-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>stu-miR172e-5p MIMAT0031294 Solanum tuberosum miR172e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 6 tgttgc 1
>stu-miR6149-5p MIMAT0030963 Solanum tuberosum miR6149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 1 ttgttg 6
>lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>aja-miR-7 MIMAT0031143 Artibeus jamaicensis miR-7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>mdo-miR-7388b-5p MIMAT0028872 Monodelphis domestica
miR-7388b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 8 ttgttg 3
>gga-miR-6560-5p MIMAT0025627 Gallus gallus miR-6560-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>gga-miR-6552-3p MIMAT0025612 Gallus gallus miR-6552-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>hco-miR-5956 MIMAT0023459 Haemonchus contortus miR-5956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>sha-miR-7 MIMAT0022793 Sarcophilus harrisii miR-7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>aca-miR-5452-3p MIMAT0022076 Anolis carolinensis miR-5452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>aca-miR-7-2-3p MIMAT0021985 Anolis carolinensis miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>aca-miR-7-1-3p MIMAT0021984 Anolis carolinensis miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>aca-miR-21-3p MIMAT0021866 Anolis carolinensis miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 8 ttgttg 3
>dme-miR-4987-5p MIMAT0020225 Drosophila melanogaster
miR-4987-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster
miR-4973-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 7 tgttgc 2
>dme-miR-4968-3p MIMAT0032118 Drosophila melanogaster
miR-4968-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus
miR-4854
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 8 ttgttg 3
>hsa-miR-4684-3p MIMAT0019770 Homo sapiens miR-4684-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>pma-miR-7a-3p MIMAT0019371 Petromyzon marinus miR-7a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>gma-miR4412-5p MIMAT0020954 Glycine max miR4412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 1 tgttgc 6
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>tca-miR-3839-3p MIMAT0018723 Tribolium castaneum miR-3839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 1 ttgttg 6
>cin-miR-4093-3p MIMAT0016673 Ciona intestinalis miR-4093-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>cin-miR-4001c-3p MIMAT0016451 Ciona intestinalis miR-4001c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>aly-miR172d-5p MIMAT0017527 Arabidopsis lyrata miR172d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 6 tgttgc 1
>tgu-miR-7-4-3p MIMAT0031020 Taeniopygia guttata miR-7-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>tgu-miR-7-1-3p MIMAT0014632 Taeniopygia guttata miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>dme-miR-2491-3p MIMAT0020912 Drosophila melanogaster
miR-2491-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>bta-miR-2434 MIMAT0012006 Bos taurus miR-2434
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 1 ttgttg 6
>bfl-miR-2072-5p MIMAT0010000 Branchiostoma floridae miR-2072-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 7 tgttgc 2
>cfa-miR-367 MIMAT0009859 Canis familiaris miR-367
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 3 ttgttg 8
>cfa-miR-409 MIMAT0006726 Canis familiaris miR-409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttgttg 6
||||||
Sbjct: 1 ttgttg 6
>cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>oan-miR-7-1-3p MIMAT0009195 Ornithorhynchus anatinus miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>oan-miR-7-3p MIMAT0006987 Ornithorhynchus anatinus miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>tae-miR1134 MIMAT0005369 Triticum aestivum miR1134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>ppt-miR902l-5p MIMAT0005087 Physcomitrella patens miR902l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>ppt-miR902k-5p MIMAT0005085 Physcomitrella patens miR902k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 8 ttgttg 3
>gga-miR-21-3p MIMAT0026643 Gallus gallus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>rno-miR-409a-3p MIMAT0003205 Rattus norvegicus miR-409a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>mmu-miR-367-5p MIMAT0017214 Mus musculus miR-367-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>ath-miR172d-5p MIMAT0031901 Arabidopsis thaliana miR172d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 6 tgttgc 1
>rno-miR-7a-2-3p MIMAT0017091 Rattus norvegicus miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>hsa-miR-367-5p MIMAT0004686 Homo sapiens miR-367-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttgc 7
||||||
Sbjct: 3 tgttgc 8
>mmu-miR-7b-3p MIMAT0017071 Mus musculus miR-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>mmu-miR-7a-2-3p MIMAT0017070 Mus musculus miR-7a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>mmu-miR-7a-1-3p MIMAT0004670 Mus musculus miR-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>hsa-miR-196a-3p MIMAT0004562 Homo sapiens miR-196a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttgc 7
||||||
Sbjct: 8 tgttgc 3
>hsa-miR-7-2-3p MIMAT0004554 Homo sapiens miR-7-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
>hsa-miR-7-1-3p MIMAT0004553 Homo sapiens miR-7-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttgttg 6
||||||
Sbjct: 6 ttgttg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 121
Number of extensions: 113
Number of successful extensions: 90
Number of sequences better than 100.0: 90
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 90
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)