BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur2-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p 14 20
gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p 14 20
stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c 14 20
stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p 14 20
stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p 14 20
stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a 14 20
cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623 14 20
hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p 14 20
ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303 14 20
ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303 14 20
hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303 14 20
hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p 14 20
dvi-miR-927-5p MIMAT0035570 Drosophila virilis miR-927-5p 12 80
nve-miR-2041b-3p MIMAT0035382 Nematostella vectensis miR-2041b-3p 12 80
nve-miR-2041b MIMAT0035380 Nematostella vectensis miR-2041b 12 80
atr-miR8580 MIMAT0033864 Amborella trichopoda miR8580 12 80
sma-miR-8472-5p MIMAT0033663 Schistosoma mansoni miR-8472-5p 12 80
sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p 12 80
ssa-miR-737-3p MIMAT0032687 Salmo salar miR-737-3p 12 80
mmu-miR-7689-3p MIMAT0029909 Mus musculus miR-7689-3p 12 80
mmu-miR-465d-5p MIMAT0029880 Mus musculus miR-465d-5p 12 80
gga-miR-7480-3p MIMAT0029115 Gallus gallus miR-7480-3p 12 80
oan-miR-7419-3p MIMAT0028987 Ornithorhynchus anatinus miR-7419-3p 12 80
mdo-miR-7279-3p MIMAT0028533 Monodelphis domestica miR-7279-3p 12 80
mmu-miR-6973a-3p MIMAT0027849 Mus musculus miR-6973a-3p 12 80
hsa-miR-6866-5p MIMAT0027632 Homo sapiens miR-6866-5p 12 80
gga-miR-6582-5p MIMAT0025671 Gallus gallus miR-6582-5p 12 80
hme-miR-927 MIMAT0024990 Heliconius melpomene miR-927 12 80
ppe-miR6262 MIMAT0027278 Prunus persica miR6262 12 80
tca-miR-927b-5p MIMAT0023579 Tribolium castaneum miR-927b-5p 12 80
tca-miR-6017-3p MIMAT0023576 Tribolium castaneum miR-6017-3p 12 80
ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b 12 80
aca-miR-5426-5p MIMAT0022046 Anolis carolinensis miR-5426-5p 12 80
aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p 12 80
rmi-miR-5328 MIMAT0021401 Rhipicephalus microplus miR-5328 12 80
tre-miR-5045 MIMAT0021078 Terebratulina retusa miR-5045 12 80
gpy-miR-5045 MIMAT0021077 Glottidia pyramidata miR-5045 12 80
gma-miR5035-3p MIMAT0032121 Glycine max miR5035-3p 12 80
gma-miR5035-5p MIMAT0021058 Glycine max miR5035-5p 12 80
hsa-miR-4760-5p MIMAT0019906 Homo sapiens miR-4760-5p 12 80
hsa-miR-4744 MIMAT0019875 Homo sapiens miR-4744 12 80
dme-miR-3641-3p MIMAT0018056 Drosophila melanogaster miR-3641-3p 12 80
aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p 12 80
mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p 12 80
api-miR-927 MIMAT0014740 Acyrthosiphon pisum miR-927 12 80
rno-miR-465-5p MIMAT0012850 Rattus norvegicus miR-465-5p 12 80
mtr-miR2663 MIMAT0013470 Medicago truncatula miR2663 12 80
dsi-miR-927-5p MIMAT0012483 Drosophila simulans miR-927-5p 12 80
dps-miR-2566b-5p MIMAT0012400 Drosophila pseudoobscura miR-2566b-5p 12 80
dps-miR-2566a-2-5p MIMAT0016970 Drosophila pseudoobscura miR-256... 12 80
dps-miR-2566a-1-5p MIMAT0012394 Drosophila pseudoobscura miR-256... 12 80
dps-miR-927-5p MIMAT0012269 Drosophila pseudoobscura miR-927-5p 12 80
aga-miR-927 MIMAT0010102 Anopheles gambiae miR-927 12 80
bmo-miR-927-5p MIMAT0009157 Bombyx mori miR-927-5p 12 80
tca-miR-927a-5p MIMAT0008391 Tribolium castaneum miR-927a-5p 12 80
mml-miR-651 MIMAT0006492 Macaca mulatta miR-651 12 80
dme-miR-927-5p MIMAT0005501 Drosophila melanogaster miR-927-5p 12 80
mmu-miR-465c-5p MIMAT0004873 Mus musculus miR-465c-5p 12 80
mmu-miR-465b-5p MIMAT0004871 Mus musculus miR-465b-5p 12 80
ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a 12 80
ppt-miR1218 MIMAT0003907 Physcomitrella patens miR1218 12 80
mmu-miR-465a-5p MIMAT0002106 Mus musculus miR-465a-5p 12 80
>ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 2 tttagag 8
>gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagag 7
|||||||
Sbjct: 8 tttagag 2
>stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagag 7
|||||||
Sbjct: 8 tttagag 2
>stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagag 7
|||||||
Sbjct: 8 tttagag 2
>hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 2 tttagag 8
>ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagag 7
|||||||
Sbjct: 1 tttagag 7
>hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagag 7
|||||||
Sbjct: 8 tttagag 2
>dvi-miR-927-5p MIMAT0035570 Drosophila virilis miR-927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>nve-miR-2041b-3p MIMAT0035382 Nematostella vectensis
miR-2041b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>nve-miR-2041b MIMAT0035380 Nematostella vectensis miR-2041b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>atr-miR8580 MIMAT0033864 Amborella trichopoda miR8580
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>sma-miR-8472-5p MIMAT0033663 Schistosoma mansoni miR-8472-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>ssa-miR-737-3p MIMAT0032687 Salmo salar miR-737-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>mmu-miR-7689-3p MIMAT0029909 Mus musculus miR-7689-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>mmu-miR-465d-5p MIMAT0029880 Mus musculus miR-465d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>gga-miR-7480-3p MIMAT0029115 Gallus gallus miR-7480-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 8 ttagag 3
>oan-miR-7419-3p MIMAT0028987 Ornithorhynchus anatinus
miR-7419-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>mdo-miR-7279-3p MIMAT0028533 Monodelphis domestica miR-7279-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 7 ttagag 2
>mmu-miR-6973a-3p MIMAT0027849 Mus musculus miR-6973a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 8 ttagag 3
>hsa-miR-6866-5p MIMAT0027632 Homo sapiens miR-6866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>gga-miR-6582-5p MIMAT0025671 Gallus gallus miR-6582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>hme-miR-927 MIMAT0024990 Heliconius melpomene miR-927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>ppe-miR6262 MIMAT0027278 Prunus persica miR6262
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>tca-miR-927b-5p MIMAT0023579 Tribolium castaneum miR-927b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>tca-miR-6017-3p MIMAT0023576 Tribolium castaneum miR-6017-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 8 ttagag 3
>ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>aca-miR-5426-5p MIMAT0022046 Anolis carolinensis miR-5426-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 8 ttagag 3
>aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>rmi-miR-5328 MIMAT0021401 Rhipicephalus microplus miR-5328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>tre-miR-5045 MIMAT0021078 Terebratulina retusa miR-5045
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>gpy-miR-5045 MIMAT0021077 Glottidia pyramidata miR-5045
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>gma-miR5035-3p MIMAT0032121 Glycine max miR5035-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>gma-miR5035-5p MIMAT0021058 Glycine max miR5035-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 8 tttaga 3
>hsa-miR-4760-5p MIMAT0019906 Homo sapiens miR-4760-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>hsa-miR-4744 MIMAT0019875 Homo sapiens miR-4744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 6 tttaga 1
>dme-miR-3641-3p MIMAT0018056 Drosophila melanogaster
miR-3641-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttaga 6
||||||
Sbjct: 6 tttaga 1
>aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagag 7
||||||
Sbjct: 8 ttagag 3
>api-miR-927 MIMAT0014740 Acyrthosiphon pisum miR-927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>rno-miR-465-5p MIMAT0012850 Rattus norvegicus miR-465-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>mtr-miR2663 MIMAT0013470 Medicago truncatula miR2663
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>dsi-miR-927-5p MIMAT0012483 Drosophila simulans miR-927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>dps-miR-2566b-5p MIMAT0012400 Drosophila pseudoobscura
miR-2566b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>dps-miR-2566a-2-5p MIMAT0016970 Drosophila pseudoobscura
miR-2566a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>dps-miR-2566a-1-5p MIMAT0012394 Drosophila pseudoobscura
miR-2566a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>dps-miR-927-5p MIMAT0012269 Drosophila pseudoobscura miR-927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>aga-miR-927 MIMAT0010102 Anopheles gambiae miR-927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>bmo-miR-927-5p MIMAT0009157 Bombyx mori miR-927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>tca-miR-927a-5p MIMAT0008391 Tribolium castaneum miR-927a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>mml-miR-651 MIMAT0006492 Macaca mulatta miR-651
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>dme-miR-927-5p MIMAT0005501 Drosophila melanogaster miR-927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 1 tttaga 6
>mmu-miR-465c-5p MIMAT0004873 Mus musculus miR-465c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>mmu-miR-465b-5p MIMAT0004871 Mus musculus miR-465b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
>ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 1 ttagag 6
>ppt-miR1218 MIMAT0003907 Physcomitrella patens miR1218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagag 7
||||||
Sbjct: 3 ttagag 8
>mmu-miR-465a-5p MIMAT0002106 Mus musculus miR-465a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttaga 6
||||||
Sbjct: 3 tttaga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 77
Number of successful extensions: 62
Number of sequences better than 100.0: 62
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 62
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
