BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-6-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b 14 20
gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a 14 20
mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p 14 20
hsa-miR-3591-5p MIMAT0019876 Homo sapiens miR-3591-5p 14 20
cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p 14 20
aly-miR840-5p MIMAT0017625 Arabidopsis lyrata miR840-5p 14 20
rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus miR-rL1-... 14 20
oha-miR-190b-3p MIMAT0036776 Ophiophagus hannah miR-190b-3p 12 80
gma-miR9758 MIMAT0036392 Glycine max miR9758 12 80
chi-miR-451-3p MIMAT0036238 Capra hircus miR-451-3p 12 80
cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861 12 80
gra-miR8739 MIMAT0034257 Gossypium raimondii miR8739 12 80
gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765 12 80
atr-miR8598 MIMAT0033887 Amborella trichopoda miR8598 12 80
atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597 12 80
sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p 12 80
sma-miR-8408-3p MIMAT0033521 Schistosoma mansoni miR-8408-3p 12 80
ath-miR8183 MIMAT0032782 Arabidopsis thaliana miR8183 12 80
ssa-miR-190b-3p MIMAT0032439 Salmo salar miR-190b-3p 12 80
gga-miR-6692-5p MIMAT0025798 Gallus gallus miR-6692-5p 12 80
pgi-miR6141 MIMAT0027265 Panax ginseng miR6141 12 80
osa-miR5808 MIMAT0023280 Oryza sativa miR5808 12 80
gma-miR4387e MIMAT0022464 Glycine max miR4387e 12 80
aca-miR-5441 MIMAT0022063 Anolis carolinensis miR-5441 12 80
aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p 12 80
mtr-miR5263 MIMAT0021263 Medicago truncatula miR5263 12 80
mtr-miR5248 MIMAT0021244 Medicago truncatula miR5248 12 80
hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p 12 80
hsa-miR-4509 MIMAT0019046 Homo sapiens miR-4509 12 80
hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p 12 80
api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054 12 80
gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p 12 80
ath-miR849 MIMAT0004271 Arabidopsis thaliana miR849 12 80
mdo-miR-32-3p MIMAT0026654 Monodelphis domestica miR-32-3p 12 80
mml-miR-32-3p MIMAT0026578 Macaca mulatta miR-32-3p 12 80
gga-miR-32-3p MIMAT0026508 Gallus gallus miR-32-3p 12 80
ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p 12 80
>gra-miR8786b MIMAT0034239 Gossypium raimondii miR8786b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagtg 7
|||||||
Sbjct: 2 tttagtg 8
>gra-miR8786a MIMAT0034238 Gossypium raimondii miR8786a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagtg 7
|||||||
Sbjct: 2 tttagtg 8
>mdo-miR-7317-3p MIMAT0028635 Monodelphis domestica miR-7317-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagtg 7
|||||||
Sbjct: 2 tttagtg 8
>hsa-miR-3591-5p MIMAT0019876 Homo sapiens miR-3591-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagtg 7
|||||||
Sbjct: 1 tttagtg 7
>cin-miR-4200-5p MIMAT0016819 Ciona intestinalis miR-4200-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagtg 7
|||||||
Sbjct: 7 tttagtg 1
>aly-miR840-5p MIMAT0017625 Arabidopsis lyrata miR840-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttagtg 7
|||||||
Sbjct: 8 tttagtg 2
>rlcv-miR-rL1-6-5p MIMAT0003434 Rhesus lymphocryptovirus
miR-rL1-6-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttagtg 7
|||||||
Sbjct: 2 tttagtg 8
>oha-miR-190b-3p MIMAT0036776 Ophiophagus hannah miR-190b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 6 tttagt 1
>gma-miR9758 MIMAT0036392 Glycine max miR9758
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 3 tttagt 8
>chi-miR-451-3p MIMAT0036238 Capra hircus miR-451-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>cfa-miR-8861 MIMAT0034356 Canis familiaris miR-8861
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>gra-miR8739 MIMAT0034257 Gossypium raimondii miR8739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 8 tttagt 3
>gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>atr-miR8598 MIMAT0033887 Amborella trichopoda miR8598
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>atr-miR8597 MIMAT0033886 Amborella trichopoda miR8597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>sma-miR-8438-5p MIMAT0033580 Schistosoma mansoni miR-8438-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagtg 7
||||||
Sbjct: 6 ttagtg 1
>sma-miR-8408-3p MIMAT0033521 Schistosoma mansoni miR-8408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>ath-miR8183 MIMAT0032782 Arabidopsis thaliana miR8183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>ssa-miR-190b-3p MIMAT0032439 Salmo salar miR-190b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 6 tttagt 1
>gga-miR-6692-5p MIMAT0025798 Gallus gallus miR-6692-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>pgi-miR6141 MIMAT0027265 Panax ginseng miR6141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 8 tttagt 3
>osa-miR5808 MIMAT0023280 Oryza sativa miR5808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 6 tttagt 1
>gma-miR4387e MIMAT0022464 Glycine max miR4387e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
>aca-miR-5441 MIMAT0022063 Anolis carolinensis miR-5441
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 1 tttagt 6
>aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttagtg 7
||||||
Sbjct: 8 ttagtg 3
>mtr-miR5263 MIMAT0021263 Medicago truncatula miR5263
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 8 tttagt 3
>mtr-miR5248 MIMAT0021244 Medicago truncatula miR5248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 3 tttagt 8
>hsa-miR-4671-3p MIMAT0019753 Homo sapiens miR-4671-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>hsa-miR-4509 MIMAT0019046 Homo sapiens miR-4509
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 6 tttagt 1
>hsa-miR-3606-5p MIMAT0017983 Homo sapiens miR-3606-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 1 ttagtg 6
>ath-miR849 MIMAT0004271 Arabidopsis thaliana miR849
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttagt 6
||||||
Sbjct: 8 tttagt 3
>mdo-miR-32-3p MIMAT0026654 Monodelphis domestica miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 3 tttagt 8
>mml-miR-32-3p MIMAT0026578 Macaca mulatta miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 3 tttagt 8
>gga-miR-32-3p MIMAT0026508 Gallus gallus miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttagt 6
||||||
Sbjct: 3 tttagt 8
>ebv-miR-BART1-5p MIMAT0000999 Epstein Barr miR-BART1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttagtg 7
||||||
Sbjct: 3 ttagtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 43
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
