BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-40262b
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-1180-3p MIMAT0028265 Macaca mulatta miR-1180-3p 14 20
ggo-miR-1180 MIMAT0024214 Gorilla gorilla miR-1180 14 20
ppy-miR-1180 MIMAT0016145 Pongo pygmaeus miR-1180 14 20
eca-miR-1180 MIMAT0013020 Equus caballus miR-1180 14 20
hsa-miR-1180-3p MIMAT0005825 Homo sapiens miR-1180-3p 14 20
tch-miR-9771c MIMAT0036482 Tupaia chinensis miR-9771c 12 80
bdi-miR2118a MIMAT0035531 Brachypodium distachyon miR2118a 12 80
gsa-miR-1175-5p MIMAT0035254 Gyrodactylus salaris miR-1175-5p 12 80
efu-miR-9340 MIMAT0035104 Eptesicus fuscus miR-9340 12 80
efu-miR-9223f MIMAT0034817 Eptesicus fuscus miR-9223f 12 80
atr-miR8558b MIMAT0033949 Amborella trichopoda miR8558b 12 80
atr-miR8558a MIMAT0033830 Amborella trichopoda miR8558a 12 80
stu-miR7988 MIMAT0030862 Solanum tuberosum miR7988 12 80
prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus miR-7873a-5p 12 80
mmu-miR-7010-5p MIMAT0027924 Mus musculus miR-7010-5p 12 80
ptc-miR482c-3p MIMAT0025278 Populus trichocarpa miR482c-3p 12 80
ppe-miR482a-3p MIMAT0027272 Prunus persica miR482a-3p 12 80
gma-miR4400 MIMAT0018316 Glycine max miR4400 12 80
gma-miR4361 MIMAT0018256 Glycine max miR4361 12 80
vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p 12 80
esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p 12 80
dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p 12 80
dps-miR-2522b-5p MIMAT0012332 Drosophila pseudoobscura miR-2522b-5p 12 80
sme-miR-2147d-5p MIMAT0011406 Schmidtea mediterranea miR-2147d-5p 12 80
sme-miR-2147c MIMAT0011270 Schmidtea mediterranea miR-2147c 12 80
sme-miR-2147b MIMAT0011265 Schmidtea mediterranea miR-2147b 12 80
gma-miR1526 MIMAT0007388 Glycine max miR1526 12 80
rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p 12 80
rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5 12 80
ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b 12 80
ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a 12 80
>mml-miR-1180-3p MIMAT0028265 Macaca mulatta miR-1180-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttccgg 7
|||||||
Sbjct: 1 tttccgg 7
>ggo-miR-1180 MIMAT0024214 Gorilla gorilla miR-1180
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttccgg 7
|||||||
Sbjct: 1 tttccgg 7
>ppy-miR-1180 MIMAT0016145 Pongo pygmaeus miR-1180
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttccgg 7
|||||||
Sbjct: 1 tttccgg 7
>eca-miR-1180 MIMAT0013020 Equus caballus miR-1180
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttccgg 7
|||||||
Sbjct: 1 tttccgg 7
>hsa-miR-1180-3p MIMAT0005825 Homo sapiens miR-1180-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttccgg 7
|||||||
Sbjct: 1 tttccgg 7
>tch-miR-9771c MIMAT0036482 Tupaia chinensis miR-9771c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 8 tttccg 3
>bdi-miR2118a MIMAT0035531 Brachypodium distachyon miR2118a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 1 tttccg 6
>gsa-miR-1175-5p MIMAT0035254 Gyrodactylus salaris miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 8 tttccg 3
>efu-miR-9340 MIMAT0035104 Eptesicus fuscus miR-9340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttccgg 7
||||||
Sbjct: 7 ttccgg 2
>efu-miR-9223f MIMAT0034817 Eptesicus fuscus miR-9223f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 1 ttccgg 6
>atr-miR8558b MIMAT0033949 Amborella trichopoda miR8558b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 1 tttccg 6
>atr-miR8558a MIMAT0033830 Amborella trichopoda miR8558a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 1 tttccg 6
>stu-miR7988 MIMAT0030862 Solanum tuberosum miR7988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 8 tttccg 3
>prd-miR-7873a-5p MIMAT0030490 Panagrellus redivivus
miR-7873a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 3 ttccgg 8
>mmu-miR-7010-5p MIMAT0027924 Mus musculus miR-7010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 6 tttccg 1
>ptc-miR482c-3p MIMAT0025278 Populus trichocarpa miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 3 tttccg 8
>ppe-miR482a-3p MIMAT0027272 Prunus persica miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 1 tttccg 6
>gma-miR4400 MIMAT0018316 Glycine max miR4400
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 8 tttccg 3
>gma-miR4361 MIMAT0018256 Glycine max miR4361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttccgg 7
||||||
Sbjct: 6 ttccgg 1
>vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 1 tttccg 6
>esi-miR3466-5p MIMAT0017749 Ectocarpus siliculosus miR3466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 1 ttccgg 6
>dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttccg 6
||||||
Sbjct: 3 tttccg 8
>dps-miR-2522b-5p MIMAT0012332 Drosophila pseudoobscura
miR-2522b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 1 ttccgg 6
>sme-miR-2147d-5p MIMAT0011406 Schmidtea mediterranea
miR-2147d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 6 tttccg 1
>sme-miR-2147c MIMAT0011270 Schmidtea mediterranea miR-2147c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 6 tttccg 1
>sme-miR-2147b MIMAT0011265 Schmidtea mediterranea miR-2147b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 6 tttccg 1
>gma-miR1526 MIMAT0007388 Glycine max miR1526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttccgg 7
||||||
Sbjct: 6 ttccgg 1
>rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttccg 6
||||||
Sbjct: 8 tttccg 3
>rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttccgg 7
||||||
Sbjct: 6 ttccgg 1
>ppt-miR1220b MIMAT0004832 Physcomitrella patens miR1220b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 1 ttccgg 6
>ppt-miR1220a MIMAT0004831 Physcomitrella patens miR1220a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttccgg 7
||||||
Sbjct: 1 ttccgg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 39
Number of successful extensions: 31
Number of sequences better than 100.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
