BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us5-2-5p6
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tur-miR-5736a-3p MIMAT0023101 Tetranychus urticae miR-5736a-3p 14 20
tca-miR-3832-5p MIMAT0018694 Tribolium castaneum miR-3832-5p 14 20
hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus miR-US5-2-5p 14 20
dvi-miR-996-5p MIMAT0035610 Drosophila virilis miR-996-5p 12 80
dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster miR-9383-3p 12 80
esi-miR8621 MIMAT0033956 Ectocarpus siliculosus miR8621 12 80
cpa-miR8137 MIMAT0031830 Carica papaya miR8137 12 80
hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p 12 80
ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734 12 80
esi-miR3468-5p MIMAT0017789 Ectocarpus siliculosus miR3468-5p 12 80
zma-miR398a-5p MIMAT0015354 Zea mays miR398a-5p 12 80
nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p 12 80
cel-miR-1829c-5p MIMAT0006771 Caenorhabditis elegans miR-1829c-5p 12 80
gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p 12 80
mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p 12 80
dme-miR-286-5p MIMAT0020820 Drosophila melanogaster miR-286-5p 12 80
>tur-miR-5736a-3p MIMAT0023101 Tetranychus urticae miR-5736a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgcc 7
|||||||
Sbjct: 1 tttcgcc 7
>tca-miR-3832-5p MIMAT0018694 Tribolium castaneum miR-3832-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttcgcc 7
|||||||
Sbjct: 8 tttcgcc 2
>hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus
miR-US5-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgcc 7
|||||||
Sbjct: 2 tttcgcc 8
>dvi-miR-996-5p MIMAT0035610 Drosophila virilis miR-996-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgcc 7
||||||
Sbjct: 6 ttcgcc 1
>dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster
miR-9383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 1 ttcgcc 6
>esi-miR8621 MIMAT0033956 Ectocarpus siliculosus miR8621
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 3 ttcgcc 8
>cpa-miR8137 MIMAT0031830 Carica papaya miR8137
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 1 ttcgcc 6
>hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 1 ttcgcc 6
>ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttcgc 6
||||||
Sbjct: 1 tttcgc 6
>esi-miR3468-5p MIMAT0017789 Ectocarpus siliculosus miR3468-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttcgc 6
||||||
Sbjct: 8 tttcgc 3
>zma-miR398a-5p MIMAT0015354 Zea mays miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgcc 7
||||||
Sbjct: 8 ttcgcc 3
>nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 1 ttcgcc 6
>cel-miR-1829c-5p MIMAT0006771 Caenorhabditis elegans
miR-1829c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttcgc 6
||||||
Sbjct: 8 tttcgc 3
>gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgcc 7
||||||
Sbjct: 3 ttcgcc 8
>mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgcc 7
||||||
Sbjct: 7 ttcgcc 2
>dme-miR-286-5p MIMAT0020820 Drosophila melanogaster miR-286-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgcc 7
||||||
Sbjct: 6 ttcgcc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 26
Number of extensions: 23
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)