BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-us5-2-5p6
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tur-miR-5736a-3p MIMAT0023101 Tetranychus urticae miR-5736a-3p         14      20
tca-miR-3832-5p MIMAT0018694 Tribolium castaneum miR-3832-5p           14      20
hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus miR-US5-2-5p      14      20
dvi-miR-996-5p MIMAT0035610 Drosophila virilis miR-996-5p              12      80
dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster miR-9383-3p       12      80
esi-miR8621 MIMAT0033956 Ectocarpus siliculosus miR8621                12      80
cpa-miR8137 MIMAT0031830 Carica papaya miR8137                         12      80
hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p                  12      80
ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734                      12      80
esi-miR3468-5p MIMAT0017789 Ectocarpus siliculosus miR3468-5p          12      80
zma-miR398a-5p MIMAT0015354 Zea mays miR398a-5p                        12      80
nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p        12      80
cel-miR-1829c-5p MIMAT0006771 Caenorhabditis elegans miR-1829c-5p      12      80
gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p                 12      80
mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p                    12      80
dme-miR-286-5p MIMAT0020820 Drosophila melanogaster miR-286-5p         12      80
>tur-miR-5736a-3p MIMAT0023101 Tetranychus urticae miR-5736a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttcgcc 7
         |||||||
Sbjct: 1 tttcgcc 7
>tca-miR-3832-5p MIMAT0018694 Tribolium castaneum miR-3832-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttcgcc 7
         |||||||
Sbjct: 8 tttcgcc 2
>hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus
         miR-US5-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttcgcc 7
         |||||||
Sbjct: 2 tttcgcc 8
>dvi-miR-996-5p MIMAT0035610 Drosophila virilis miR-996-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 6 ttcgcc 1
>dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster
         miR-9383-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 1 ttcgcc 6
>esi-miR8621 MIMAT0033956 Ectocarpus siliculosus miR8621
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 3 ttcgcc 8
>cpa-miR8137 MIMAT0031830 Carica papaya miR8137
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 1 ttcgcc 6
>hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 1 ttcgcc 6
>ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tttcgc 6
         ||||||
Sbjct: 1 tttcgc 6
>esi-miR3468-5p MIMAT0017789 Ectocarpus siliculosus miR3468-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tttcgc 6
         ||||||
Sbjct: 8 tttcgc 3
>zma-miR398a-5p MIMAT0015354 Zea mays miR398a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 8 ttcgcc 3
>nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 1 ttcgcc 6
>cel-miR-1829c-5p MIMAT0006771 Caenorhabditis elegans
         miR-1829c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tttcgc 6
         ||||||
Sbjct: 8 tttcgc 3
>gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 3 ttcgcc 8
>mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 7 ttcgcc 2
>dme-miR-286-5p MIMAT0020820 Drosophila melanogaster miR-286-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgcc 7
         ||||||
Sbjct: 6 ttcgcc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 26
Number of extensions: 23
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)