BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-12-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-191b MIMAT0034750 Equus caballus miR-191b 14 20
rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b 14 20
aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p 14 20
rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus miR-rL1... 14 20
ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a 14 20
dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p 12 80
gsa-miR-9390-3p MIMAT0035323 Gyrodactylus salaris miR-9390-3p 12 80
gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p 12 80
eca-miR-329b MIMAT0034487 Equus caballus miR-329b 12 80
cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835 12 80
gra-miR8660 MIMAT0034030 Gossypium raimondii miR8660 12 80
sma-miR-8459-5p MIMAT0033633 Schistosoma mansoni miR-8459-5p 12 80
sma-miR-8440-3p MIMAT0033585 Schistosoma mansoni miR-8440-3p 12 80
str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p 12 80
ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p 12 80
cel-miR-8210-3p MIMAT0032838 Caenorhabditis elegans miR-8210-3p 12 80
cel-miR-8209-5p MIMAT0032835 Caenorhabditis elegans miR-8209-5p 12 80
stu-miR8002-5p MIMAT0030892 Solanum tuberosum miR8002-5p 12 80
prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p 12 80
bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p 12 80
lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p 12 80
pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p 12 80
cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76 12 80
sbi-miR6235-3p MIMAT0026455 Sorghum bicolor miR6235-3p 12 80
sbi-miR6225-3p MIMAT0026421 Sorghum bicolor miR6225-3p 12 80
mdm-miR858 MIMAT0026070 Malus domestica miR858 12 80
hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981 12 80
cca-miR6105a MIMAT0024538 Cynara cardunculus miR6105a 12 80
mse-miR-981 MIMAT0024433 Manduca sexta miR-981 12 80
ame-miR-6053 MIMAT0023677 Apis mellifera miR-6053 12 80
hco-miR-76 MIMAT0023496 Haemonchus contortus miR-76 12 80
hco-miR-5967 MIMAT0023474 Haemonchus contortus miR-5967 12 80
osa-miR5835 MIMAT0023310 Oryza sativa miR5835 12 80
ath-miR858b MIMAT0022417 Arabidopsis thaliana miR858b 12 80
asu-miR-76-3p MIMAT0021471 Ascaris suum miR-76-3p 12 80
gma-miR4998 MIMAT0021016 Glycine max miR4998 12 80
spu-miR-981 MIMAT0020068 Strongylocentrotus purpuratus miR-981 12 80
gma-miR4399 MIMAT0018315 Glycine max miR4399 12 80
gma-miR4359a MIMAT0018251 Glycine max miR4359a 12 80
api-miR-981 MIMAT0014736 Acyrthosiphon pisum miR-981 12 80
cqu-miR-981 MIMAT0014386 Culex quinquefasciatus miR-981 12 80
aae-miR-981 MIMAT0014267 Aedes aegypti miR-981 12 80
osa-miR2863b MIMAT0013818 Oryza sativa miR2863b 12 80
dpu-miR-981 MIMAT0012675 Daphnia pulex miR-981 12 80
dsi-miR-981-3p MIMAT0012486 Drosophila simulans miR-981-3p 12 80
dsi-miR-961-3p MIMAT0012470 Drosophila simulans miR-961-3p 12 80
dps-miR-981-3p MIMAT0012220 Drosophila pseudoobscura miR-981-3p 12 80
crm-miR-76 MIMAT0011525 Caenorhabditis remanei miR-76 12 80
cbr-miR-76 MIMAT0011466 Caenorhabditis briggsae miR-76 12 80
sme-miR-76-3p MIMAT0011397 Schmidtea mediterranea miR-76-3p 12 80
ame-miR-981 MIMAT0010121 Apis mellifera miR-981 12 80
tca-miR-981 MIMAT0010098 Tribolium castaneum miR-981 12 80
lgi-miR-981 MIMAT0009601 Lottia gigantea miR-981 12 80
cte-miR-981 MIMAT0009548 Capitella teleta miR-981 12 80
bfl-miR-375 MIMAT0009501 Branchiostoma floridae miR-375 12 80
aga-miR-981 MIMAT0007857 Anopheles gambiae miR-981 12 80
dme-miR-981-3p MIMAT0005497 Drosophila melanogaster miR-981-3p 12 80
dme-miR-961-3p MIMAT0020856 Drosophila melanogaster miR-961-3p 12 80
cel-miR-76-3p MIMAT0000048 Caenorhabditis elegans miR-76-3p 12 80
>eca-miR-191b MIMAT0034750 Equus caballus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttcgtt 7
|||||||
Sbjct: 8 tttcgtt 2
>rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttcgtt 7
|||||||
Sbjct: 8 tttcgtt 2
>aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgtt 7
|||||||
Sbjct: 1 tttcgtt 7
>rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus
miR-rL1-30-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgtt 7
|||||||
Sbjct: 1 tttcgtt 7
>ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgtt 7
|||||||
Sbjct: 1 tttcgtt 7
>dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>gsa-miR-9390-3p MIMAT0035323 Gyrodactylus salaris miR-9390-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttcgt 6
||||||
Sbjct: 6 tttcgt 1
>gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>eca-miR-329b MIMAT0034487 Equus caballus miR-329b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgtt 7
||||||
Sbjct: 6 ttcgtt 1
>cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>gra-miR8660 MIMAT0034030 Gossypium raimondii miR8660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttcgt 6
||||||
Sbjct: 6 tttcgt 1
>sma-miR-8459-5p MIMAT0033633 Schistosoma mansoni miR-8459-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgtt 7
||||||
Sbjct: 7 ttcgtt 2
>sma-miR-8440-3p MIMAT0033585 Schistosoma mansoni miR-8440-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 2 ttcgtt 7
>str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>cel-miR-8210-3p MIMAT0032838 Caenorhabditis elegans miR-8210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttcgt 6
||||||
Sbjct: 8 tttcgt 3
>cel-miR-8209-5p MIMAT0032835 Caenorhabditis elegans miR-8209-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgtt 7
||||||
Sbjct: 8 ttcgtt 3
>stu-miR8002-5p MIMAT0030892 Solanum tuberosum miR8002-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttcgt 6
||||||
Sbjct: 3 tttcgt 8
>prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>sbi-miR6235-3p MIMAT0026455 Sorghum bicolor miR6235-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgtt 7
||||||
Sbjct: 6 ttcgtt 1
>sbi-miR6225-3p MIMAT0026421 Sorghum bicolor miR6225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgtt 7
||||||
Sbjct: 8 ttcgtt 3
>mdm-miR858 MIMAT0026070 Malus domestica miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgtt 7
||||||
Sbjct: 1 ttcgtt 6
>hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Stra
