BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-30-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus miR-rL1... 16 6.9
eca-miR-191b MIMAT0034750 Equus caballus miR-191b 14 27
sma-miR-8440-3p MIMAT0033585 Schistosoma mansoni miR-8440-3p 14 27
cel-miR-8209-5p MIMAT0032835 Caenorhabditis elegans miR-8209-5p 14 27
sbi-miR6225-3p MIMAT0026421 Sorghum bicolor miR6225-3p 14 27
rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b 14 27
aly-miR837-3p MIMAT0017688 Arabidopsis lyrata miR837-3p 14 27
aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p 14 27
osa-miR2863b MIMAT0013818 Oryza sativa miR2863b 14 27
dsi-miR-961-3p MIMAT0012470 Drosophila simulans miR-961-3p 14 27
dme-miR-961-3p MIMAT0020856 Drosophila melanogaster miR-961-3p 14 27
ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a 14 27
ath-miR837-3p MIMAT0004259 Arabidopsis thaliana miR837-3p 14 27
>rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus
miR-rL1-30-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttcgttt 8
||||||||
Sbjct: 1 tttcgttt 8
>eca-miR-191b MIMAT0034750 Equus caballus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttcgtt 7
|||||||
Sbjct: 8 tttcgtt 2
>sma-miR-8440-3p MIMAT0033585 Schistosoma mansoni miR-8440-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcgttt 8
|||||||
Sbjct: 2 ttcgttt 8
>cel-miR-8209-5p MIMAT0032835 Caenorhabditis elegans miR-8209-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcgttt 8
|||||||
Sbjct: 8 ttcgttt 2
>sbi-miR6225-3p MIMAT0026421 Sorghum bicolor miR6225-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcgttt 8
|||||||
Sbjct: 8 ttcgttt 2
>rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttcgtt 7
|||||||
Sbjct: 8 tttcgtt 2
>aly-miR837-3p MIMAT0017688 Arabidopsis lyrata miR837-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcgttt 8
|||||||
Sbjct: 7 ttcgttt 1
>aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgtt 7
|||||||
Sbjct: 1 tttcgtt 7
>osa-miR2863b MIMAT0013818 Oryza sativa miR2863b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcgttt 8
|||||||
Sbjct: 1 ttcgttt 7
>dsi-miR-961-3p MIMAT0012470 Drosophila simulans miR-961-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcgttt 8
|||||||
Sbjct: 1 ttcgttt 7
>dme-miR-961-3p MIMAT0020856 Drosophila melanogaster miR-961-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcgttt 8
|||||||
Sbjct: 1 ttcgttt 7
>ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttcgtt 7
|||||||
Sbjct: 1 tttcgtt 7
>ath-miR837-3p MIMAT0004259 Arabidopsis thaliana miR837-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcgttt 8
|||||||
Sbjct: 7 ttcgttt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 80
Number of successful extensions: 74
Number of sequences better than 100.0: 13
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
