BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p 16 6.9
ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824 14 27
mse-miR-6099 MIMAT0024507 Manduca sexta miR-6099 14 27
osa-miR5507 MIMAT0022140 Oryza sativa miR5507 14 27
gma-miR5369 MIMAT0021603 Glycine max miR5369 14 27
dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster miR-4915-5p 14 27
bfl-miR-4882a MIMAT0020466 Branchiostoma floridae miR-4882a 14 27
gma-miR4393a MIMAT0018308 Glycine max miR4393a 14 27
bmo-miR-2787-3p MIMAT0013684 Bombyx mori miR-2787-3p 14 27
ppt-miR1026b MIMAT0005113 Physcomitrella patens miR1026b 14 27
ppt-miR1026a MIMAT0005112 Physcomitrella patens miR1026a 14 27
>hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctcat 8
||||||||
Sbjct: 1 tttctcat 8
>ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 8 tttctca 2
>mse-miR-6099 MIMAT0024507 Manduca sexta miR-6099
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>osa-miR5507 MIMAT0022140 Oryza sativa miR5507
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttctcat 8
|||||||
Sbjct: 8 ttctcat 2
>gma-miR5369 MIMAT0021603 Glycine max miR5369
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster
miR-4915-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 8 tttctca 2
>bfl-miR-4882a MIMAT0020466 Branchiostoma floridae miR-4882a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>gma-miR4393a MIMAT0018308 Glycine max miR4393a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>bmo-miR-2787-3p MIMAT0013684 Bombyx mori miR-2787-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>ppt-miR1026b MIMAT0005113 Physcomitrella patens miR1026b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
>ppt-miR1026a MIMAT0005112 Physcomitrella patens miR1026a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctca 7
|||||||
Sbjct: 7 tttctca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 222
Number of extensions: 210
Number of successful extensions: 181
Number of sequences better than 100.0: 11
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
