BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hvt-miR-h13
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m                 14      20
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l                 14      20
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k                 14      20
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f                 14      20
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e                 14      20
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p                 14      20
bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b            14      20
ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539                        14      20
eca-miR-539 MIMAT0013167 Equus caballus miR-539                        14      20
hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13                        14      20
cfa-miR-539 MIMAT0009909 Canis familiaris miR-539                      14      20
bta-miR-539 MIMAT0009342 Bos taurus miR-539                            14      20
ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539                       14      20
mml-miR-539 MIMAT0006405 Macaca mulatta miR-539                        14      20
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p                   14      20
rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p               14      20
mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p                    14      20
hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p                    14      20
ata-miR164c-5p MIMAT0037242 Aegilops tauschii miR164c-5p               12      80
ata-miR164b-5p MIMAT0037218 Aegilops tauschii miR164b-5p               12      80
ata-miR164a-5p MIMAT0037212 Aegilops tauschii miR164a-5p               12      80
ggo-miR-519e-5p MIMAT0036407 Gorilla gorilla miR-519e-5p               12      80
ggo-miR-515-5p MIMAT0036405 Gorilla gorilla miR-515-5p                 12      80
bra-miR164e-5p MIMAT0035870 Brassica rapa miR164e-5p                   12      80
bra-miR164c-5p MIMAT0035868 Brassica rapa miR164c-5p                   12      80
bra-miR164d-5p MIMAT0035866 Brassica rapa miR164d-5p                   12      80
bra-miR164b-5p MIMAT0035864 Brassica rapa miR164b-5p                   12      80
xtr-miR-428b MIMAT0035362 Xenopus tropicalis miR-428b                  12      80
efu-miR-9348 MIMAT0035118 Eptesicus fuscus miR-9348                    12      80
efu-miR-9280 MIMAT0034918 Eptesicus fuscus miR-9280                    12      80
efu-miR-9268 MIMAT0034898 Eptesicus fuscus miR-9268                    12      80
gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672                   12      80
gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c                 12      80
sly-miR164b-5p MIMAT0033975 Solanum lycopersicum miR164b-5p            12      80
sly-miR164a-5p MIMAT0033973 Solanum lycopersicum miR164a-5p            12      80
atr-miR164b MIMAT0033914 Amborella trichopoda miR164b                  12      80
atr-miR164a MIMAT0033913 Amborella trichopoda miR164a                  12      80
cpa-miR164e MIMAT0031795 Carica papaya miR164e                         12      80
cpa-miR164d MIMAT0031794 Carica papaya miR164d                         12      80
cpa-miR164c MIMAT0031793 Carica papaya miR164c                         12      80
cpa-miR164b MIMAT0031792 Carica papaya miR164b                         12      80
cpa-miR164a MIMAT0031791 Carica papaya miR164a                         12      80
ppe-miR164d MIMAT0031444 Prunus persica miR164d                        12      80
ppe-miR164c MIMAT0031443 Prunus persica miR164c                        12      80
ppe-miR164b MIMAT0031442 Prunus persica miR164b                        12      80
ppe-miR164a MIMAT0031441 Prunus persica miR164a                        12      80
stu-miR164-5p MIMAT0031235 Solanum tuberosum miR164-5p                 12      80
ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824                   12      80
mes-miR164d MIMAT0029191 Manihot esculenta miR164d                     12      80
mes-miR164c MIMAT0029190 Manihot esculenta miR164c                     12      80
mes-miR164b MIMAT0029189 Manihot esculenta miR164b                     12      80
mes-miR164a MIMAT0029188 Manihot esculenta miR164a                     12      80
gga-miR-7439-3p MIMAT0029033 Gallus gallus miR-7439-3p                 12      80
mdo-miR-30c-1-3p MIMAT0028503 Monodelphis domestica miR-30c-1-3p       12      80
mml-miR-7173-3p MIMAT0028285 Macaca mulatta miR-7173-3p                12      80
cme-miR164d MIMAT0026090 Cucumis melo miR164d                          12      80
cme-miR164c MIMAT0026086 Cucumis melo miR164c                          12      80
mdm-miR164f MIMAT0025912 Malus domestica miR164f                       12      80
mdm-miR164e MIMAT0025911 Malus domestica miR164e                       12      80
mdm-miR164d MIMAT0025910 Malus domestica miR164d                       12      80
mdm-miR164c MIMAT0025909 Malus domestica miR164c                       12      80
mdm-miR164b MIMAT0025908 Malus domestica miR164b                       12      80
mdm-miR164a MIMAT0025907 Malus domestica miR164a                       12      80
mmu-miR-6991-5p MIMAT0027884 Mus musculus miR-6991-5p                  12      80
mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p                  12      80
hsa-miR-6878-5p MIMAT0027656 Homo sapiens miR-6878-5p                  12      80
hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p                  12      80
cln-miR164 MIMAT0027349 Cunninghamia lanceolata miR164                 12      80
gga-miR-6573-5p MIMAT0025653 Gallus gallus miR-6573-5p                 12      80
gga-miR-6559-5p MIMAT0025625 Gallus gallus miR-6559-5p                 12      80
hci-miR164a MIMAT0025502 Helianthus ciliaris miR164a                   12      80
gma-miR164k MIMAT0024895 Glycine max miR164k                           12      80
gma-miR164j MIMAT0024894 Glycine max miR164j                           12      80
gma-miR164i MIMAT0024893 Glycine max miR164i                           12      80
gma-miR164h MIMAT0024892 Glycine max miR164h                           12      80
gma-miR164g MIMAT0024891 Glycine max miR164g                           12      80
gma-miR164f MIMAT0024890 Glycine max miR164f                           12      80
gma-miR164e MIMAT0024889 Glycine max miR164e                           12      80
nta-miR164c MIMAT0024648 Nicotiana tabacum miR164c                     12      80
nta-miR164b MIMAT0024647 Nicotiana tabacum miR164b                     12      80
nta-miR164a MIMAT0024646 Nicotiana tabacum miR164a                     12      80
lus-miR164e MIMAT0027227 Linum usitatissimum miR164e                   12      80
lus-miR164d MIMAT0027183 Linum usitatissimum miR164d                   12      80
lus-miR164c MIMAT0027142 Linum usitatissimum miR164c                   12      80
lus-miR164b MIMAT0027138 Linum usitatissimum miR164b                   12      80
lus-miR164a MIMAT0027129 Linum usitatissimum miR164a                   12      80
cca-miR164 MIMAT0024515 Cynara cardunculus miR164                      12      80
mml-miR-519e MIMAT0024353 Macaca mulatta miR-519e                      12      80
bna-miR164d MIMAT0023624 Brassica napus miR164d                        12      80
bna-miR164c MIMAT0023623 Brassica napus miR164c                        12      80
bna-miR164b MIMAT0023622 Brassica napus miR164b                        12      80
vun-miR164 MIMAT0022757 Vigna unguiculata miR164                       12      80
ssl-miR164b MIMAT0022508 Salvia sclarea miR164b                        12      80
ssl-miR164a MIMAT0022507 Salvia sclarea miR164a                        12      80
hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680                        12      80
cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p            12      80
asu-miR-5350d-5p MIMAT0021558 Ascaris suum miR-5350d-5p                12      80
asu-miR-5350a-5p MIMAT0021552 Ascaris suum miR-5350a-5p                12      80
mtr-miR5239 MIMAT0021233 Medicago truncatula miR5239                   12      80
bdi-miR164f MIMAT0020741 Brachypodium distachyon miR164f               12      80
bdi-miR164e MIMAT0020740 Brachypodium distachyon miR164e               12      80
cme-miR164a MIMAT0022749 Cucumis melo miR164a                          12      80
bdi-miR164c-5p MIMAT0020728 Brachypodium distachyon miR164c-5p         12      80
bdi-miR164a-5p MIMAT0020693 Brachypodium distachyon miR164a-5p         12      80
bdi-miR164b MIMAT0020669 Brachypodium distachyon miR164b               12      80
osa-miR5075 MIMAT0020561 Oryza sativa miR5075                          12      80
gma-miR164d MIMAT0020977 Glycine max miR164d                           12      80
gma-miR164c MIMAT0020976 Glycine max miR164c                           12      80
gma-miR164b MIMAT0020975 Glycine max miR164b                           12      80
dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster miR-4915-5p       12      80
bfl-miR-4882c MIMAT0020468 Branchiostoma floridae miR-4882c            12      80
tcc-miR164c MIMAT0020382 Theobroma cacao miR164c                       12      80
tcc-miR164b MIMAT0020381 Theobroma cacao miR164b                       12      80
tcc-miR164a MIMAT0020380 Theobroma cacao miR164a                       12      80
hsa-miR-4713-5p MIMAT0019820 Homo sapiens miR-4713-5p                  12      80
hsa-miR-4531 MIMAT0019070 Homo sapiens miR-4531                        12      80
far-miR164b MIMAT0018376 Festuca arundinacea miR164b                   12      80
far-miR164a MIMAT0018370 Festuca arundinacea miR164a                   12      80
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p            12      80
ppy-miR-515-5p MIMAT0015943 Pongo pygmaeus miR-515-5p                  12      80
esi-miR3453-5p MIMAT0017779 Ectocarpus siliculosus miR3453-5p          12      80
aly-miR164c-5p MIMAT0017453 Arabidopsis lyrata miR164c-5p              12      80
aly-miR164b-5p MIMAT0017451 Arabidopsis lyrata miR164b-5p              12      80
aly-miR164a-5p MIMAT0017449 Arabidopsis lyrata miR164a-5p              12      80
mmu-miR-3062-5p MIMAT0014830 Mus musculus miR-3062-5p                  12      80
ghr-miR164 MIMAT0014331 Gossypium hirsutum miR164                      12      80
rco-miR164d MIMAT0014159 Ricinus communis miR164d                      12      80
rco-miR164c MIMAT0014158 Ricinus communis miR164c                      12      80
rco-miR164b MIMAT0014157 Ricinus communis miR164b                      12      80
rco-miR164a MIMAT0014156 Ricinus communis miR164a                      12      80
ctr-miR164 MIMAT0014080 Citrus trifoliata miR164                       12      80
csi-miR164 MIMAT0014069 Citrus sinensis miR164                         12      80
zma-miR164h-5p MIMAT0013985 Zea mays miR164h-5p                        12      80
zma-miR164g-5p MIMAT0013984 Zea mays miR164g-5p                        12      80
zma-miR164f-5p MIMAT0013983 Zea mays miR164f-5p                        12      80
zma-miR164e-5p MIMAT0013982 Zea mays miR164e-5p                        12      80
hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p                    12      80
dps-miR-2556-3p MIMAT0012375 Drosophila pseudoobscura miR-2556-3p      12      80
bta-miR-2486-5p MIMAT0012081 Bos taurus miR-2486-5p                    12      80
bta-miR-2394 MIMAT0011947 Bos taurus miR-2394                          12      80
sbi-miR164e MIMAT0011326 Sorghum bicolor miR164e                       12      80
sbi-miR164d MIMAT0011325 Sorghum bicolor miR164d                       12      80
bra-miR164a MIMAT0010156 Brassica rapa miR164a                         12      80
bmo-miR-965-5p MIMAT0015295 Bombyx mori miR-965-5p                     12      80
cfa-miR-207 MIMAT0009935 Canis familiaris miR-207                      12      80
cel-miR-1822-5p MIMAT0015266 Caenorhabditis elegans miR-1822-5p        12      80
mml-miR-30c-2-3p MIMAT0031117 Macaca mulatta miR-30c-2-3p              12      80
gma-miR164a MIMAT0007354 Glycine max miR164a                           12      80
oan-miR-1402 MIMAT0007209 Ornithorhynchus anatinus miR-1402            12      80
vvi-miR164d MIMAT0005661 Vitis vinifera miR164d                        12      80
vvi-miR164c MIMAT0