BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m28
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bfl-miR-4882c MIMAT0020468 Branchiostoma floridae miR-4882c 14 20
aly-miR868-5p MIMAT0017655 Arabidopsis lyrata miR868-5p 14 20
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p 14 20
ppy-miR-516a MIMAT0036453 Pongo pygmaeus miR-516a 12 80
ggo-miR-516a MIMAT0036443 Gorilla gorilla miR-516a 12 80
ggo-miR-516a-5p MIMAT0036441 Gorilla gorilla miR-516a-5p 12 80
xtr-miR-428b MIMAT0035362 Xenopus tropicalis miR-428b 12 80
gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m 12 80
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l 12 80
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k 12 80
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f 12 80
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e 12 80
gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672 12 80
gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c 12 80
bbe-miR-4887-5p MIMAT0031704 Branchiostoma belcheri miR-4887-5p 12 80
ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824 12 80
bdi-miR7779-3p MIMAT0030313 Brachypodium distachyon miR7779-3p 12 80
bdi-miR7733-5p MIMAT0030200 Brachypodium distachyon miR7733-5p 12 80
mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p 12 80
oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus miR-7425-5p 12 80
mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p 12 80
hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p 12 80
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p 12 80
hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680 12 80
cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p 12 80
pti-miR5471 MIMAT0022104 Phaeodactylum tricornutum miR5471 12 80
asu-miR-5350d-5p MIMAT0021558 Ascaris suum miR-5350d-5p 12 80
asu-miR-5350a-5p MIMAT0021552 Ascaris suum miR-5350a-5p 12 80
rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324 12 80
dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster miR-4915-5p 12 80
bfl-miR-4887 MIMAT0020474 Branchiostoma floridae miR-4887 12 80
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p 12 80
ppy-miR-516a-5p MIMAT0015945 Pongo pygmaeus miR-516a-5p 12 80
aly-miR825-3p MIMAT0017606 Arabidopsis lyrata miR825-3p 12 80
cqu-miR-11-5p MIMAT0014406 Culex quinquefasciatus miR-11-5p 12 80
hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p 12 80
osa-miR2118a MIMAT0011740 Oryza sativa miR2118a 12 80
cel-miR-1822-5p MIMAT0015266 Caenorhabditis elegans miR-1822-5p 12 80
mmu-miR-698-3p MIMAT0003488 Mus musculus miR-698-3p 12 80
hsa-miR-516a-5p MIMAT0004770 Homo sapiens miR-516a-5p 12 80
cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p 12 80
>bfl-miR-4882c MIMAT0020468 Branchiostoma floridae miR-4882c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctcg 7
|||||||
Sbjct: 8 tttctcg 2
>aly-miR868-5p MIMAT0017655 Arabidopsis lyrata miR868-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctcg 7
|||||||
Sbjct: 2 tttctcg 8
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctcg 7
|||||||
Sbjct: 2 tttctcg 8
>ppy-miR-516a MIMAT0036453 Pongo pygmaeus miR-516a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>ggo-miR-516a MIMAT0036443 Gorilla gorilla miR-516a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>ggo-miR-516a-5p MIMAT0036441 Gorilla gorilla miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>xtr-miR-428b MIMAT0035362 Xenopus tropicalis miR-428b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 6 tttctc 1
>gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>bbe-miR-4887-5p MIMAT0031704 Branchiostoma belcheri miR-4887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>bdi-miR7779-3p MIMAT0030313 Brachypodium distachyon miR7779-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>bdi-miR7733-5p MIMAT0030200 Brachypodium distachyon miR7733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctcg 7
||||||
Sbjct: 6 ttctcg 1
>oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus
miR-7425-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 6 tttctc 1
>cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>pti-miR5471 MIMAT0022104 Phaeodactylum tricornutum miR5471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctcg 7
||||||
Sbjct: 6 ttctcg 1
>asu-miR-5350d-5p MIMAT0021558 Ascaris suum miR-5350d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 3 tttctc 8
>asu-miR-5350a-5p MIMAT0021552 Ascaris suum miR-5350a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 3 tttctc 8
>rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctcg 7
||||||
Sbjct: 8 ttctcg 3
>dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster
miR-4915-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
>bfl-miR-4887 MIMAT0020474 Branchiostoma floridae miR-4887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 3 tttctc 8
>ppy-miR-516a-5p MIMAT0015945 Pongo pygmaeus miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>aly-miR825-3p MIMAT0017606 Arabidopsis lyrata miR825-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>cqu-miR-11-5p MIMAT0014406 Culex quinquefasciatus miR-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctcg 7
||||||
Sbjct: 6 ttctcg 1
>hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>osa-miR2118a MIMAT0011740 Oryza sativa miR2118a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>cel-miR-1822-5p MIMAT0015266 Caenorhabditis elegans miR-1822-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 3 tttctc 8
>mmu-miR-698-3p MIMAT0003488 Mus musculus miR-698-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 3 ttctcg 8
>hsa-miR-516a-5p MIMAT0004770 Homo sapiens miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctcg 7
||||||
Sbjct: 1 ttctcg 6
>cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttctc 6
||||||
Sbjct: 8 tttctc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 70
Number of extensions: 67
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
