BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rcmv-miR-r1-2
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p                  16   6.9  
hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p                  16   6.9  
ssc-miR-9787-3p MIMAT0037004 Sus scrofa miR-9787-3p                    14      27
gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672                   14      27
gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c                 14      27
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586                  14      27
atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581                  14      27
bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p         14      27
hcmv-miR-UL59 MIMAT0029122 Human cytomegalovirus miR-UL59              14      27
hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p                  14      27
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p           14      27
ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640                  14      27
cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p            14      27
gma-miR1513b MIMAT0021008 Glycine max miR1513b                         14      27
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p       14      27
hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p                  14      27
ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717                      14      27
osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p                    14      27
ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1              14      27
gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p                   14      27
mmu-miR-706 MIMAT0003496 Mus musculus miR-706                          14      27
cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p          14      27
>mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tttctctc 8
         ||||||||
Sbjct: 1 tttctctc 8
>hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tttctctc 8
         ||||||||
Sbjct: 1 tttctctc 8
>ssc-miR-9787-3p MIMAT0037004 Sus scrofa miR-9787-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 7 tttctct 1
>gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 8 tttctct 2
>gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 8 tttctct 2
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 2 tttctct 8
>atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 1 ttctctc 7
>hcmv-miR-UL59 MIMAT0029122 Human cytomegalovirus miR-UL59
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 2 ttctctc 8
>hsa-miR-6873-3p MIMAT0027647 Homo sapiens miR-6873-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 1 ttctctc 7
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 2 tttctct 8
>ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 1 tttctct 7
>gma-miR1513b MIMAT0021008 Glycine max miR1513b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
         miR-4945-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 2 tttctct 8
>hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 2 ttctctc 8
>ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 1 ttctctc 7
>ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttctctc 8
         |||||||
Sbjct: 8 ttctctc 2
>mmu-miR-706 MIMAT0003496 Mus musculus miR-706
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 7 tttctct 1
>cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tttctct 7
         |||||||
Sbjct: 8 tttctct 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 185
Number of extensions: 161
Number of successful extensions: 124
Number of sequences better than 100.0: 22
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)