BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m108-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-8163-5p MIMAT0032757 Salmo salar miR-8163-5p 16 6.9
mmu-miR-7006-3p MIMAT0027917 Mus musculus miR-7006-3p 16 6.9
mmu-miR-1966-3p MIMAT0022952 Mus musculus miR-1966-3p 16 6.9
oan-miR-1401-5p MIMAT0007207 Ornithorhynchus anatinus miR-1401-5p 16 6.9
mcmv-miR-m108-1-3p MIMAT0005558 Mouse cytomegalovirus miR-m108-1-3p 16 6.9
bdi-miR9497 MIMAT0035506 Brachypodium distachyon miR9497 14 27
atr-miR8610.2 MIMAT0033902 Amborella trichopoda miR8610.2 14 27
str-miR-7880k-5p MIMAT0033358 Strongyloides ratti miR-7880k-5p 14 27
ghr-miR7505 MIMAT0029152 Gossypium hirsutum miR7505 14 27
mdo-miR-7314-5p MIMAT0028628 Monodelphis domestica miR-7314-5p 14 27
sbi-miR6221-5p MIMAT0026408 Sorghum bicolor miR6221-5p 14 27
gga-miR-6544-5p MIMAT0025591 Gallus gallus miR-6544-5p 14 27
sko-miR-4832 MIMAT0020046 Saccoglossus kowalevskii miR-4832 14 27
ghr-miR156c MIMAT0005808 Gossypium hirsutum miR156c 14 27
>ssa-miR-8163-5p MIMAT0032757 Salmo salar miR-8163-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctgac 8
||||||||
Sbjct: 1 tttctgac 8
>mmu-miR-7006-3p MIMAT0027917 Mus musculus miR-7006-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctgac 8
||||||||
Sbjct: 1 tttctgac 8
>mmu-miR-1966-3p MIMAT0022952 Mus musculus miR-1966-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctgac 8
||||||||
Sbjct: 1 tttctgac 8
>oan-miR-1401-5p MIMAT0007207 Ornithorhynchus anatinus
miR-1401-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctgac 8
||||||||
Sbjct: 1 tttctgac 8
>mcmv-miR-m108-1-3p MIMAT0005558 Mouse cytomegalovirus
miR-m108-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttctgac 8
||||||||
Sbjct: 1 tttctgac 8
>bdi-miR9497 MIMAT0035506 Brachypodium distachyon miR9497
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctga 7
|||||||
Sbjct: 1 tttctga 7
>atr-miR8610.2 MIMAT0033902 Amborella trichopoda miR8610.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctgac 8
|||||||
Sbjct: 1 ttctgac 7
>str-miR-7880k-5p MIMAT0033358 Strongyloides ratti miR-7880k-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttctgac 8
|||||||
Sbjct: 8 ttctgac 2
>ghr-miR7505 MIMAT0029152 Gossypium hirsutum miR7505
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctga 7
|||||||
Sbjct: 8 tttctga 2
>mdo-miR-7314-5p MIMAT0028628 Monodelphis domestica miR-7314-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctga 7
|||||||
Sbjct: 7 tttctga 1
>sbi-miR6221-5p MIMAT0026408 Sorghum bicolor miR6221-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctgac 8
|||||||
Sbjct: 1 ttctgac 7
>gga-miR-6544-5p MIMAT0025591 Gallus gallus miR-6544-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctga 7
|||||||
Sbjct: 8 tttctga 2
>sko-miR-4832 MIMAT0020046 Saccoglossus kowalevskii miR-4832
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctga 7
|||||||
Sbjct: 7 tttctga 1
>ghr-miR156c MIMAT0005808 Gossypium hirsutum miR156c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttctgac 8
|||||||
Sbjct: 8 ttctgac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 137
Number of extensions: 118
Number of successful extensions: 105
Number of sequences better than 100.0: 14
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
