BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h7-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR9559-5p MIMAT0035671 Brassica rapa miR9559-5p 16 6.9
atr-miR159 MIMAT0033911 Amborella trichopoda miR159 16 6.9
cpa-miR159a MIMAT0031780 Carica papaya miR159a 16 6.9
ppe-miR159 MIMAT0031437 Prunus persica miR159 16 6.9
bdi-miR159b-3p.1 MIMAT0030086 Brachypodium distachyon miR159b-3p.1 16 6.9
mes-miR159b MIMAT0029176 Manihot esculenta miR159b 16 6.9
cme-miR159a MIMAT0026160 Cucumis melo miR159a 16 6.9
htu-miR159a MIMAT0025497 Helianthus tuberosus miR159a 16 6.9
hbr-miR159a MIMAT0025283 Hevea brasiliensis miR159a 16 6.9
nta-miR159 MIMAT0024639 Nicotiana tabacum miR159 16 6.9
lus-miR159c MIMAT0027235 Linum usitatissimum miR159c 16 6.9
lus-miR159b MIMAT0027233 Linum usitatissimum miR159b 16 6.9
mes-miR159a MIMAT0024410 Manihot esculenta miR159a 16 6.9
gma-miR159e-3p MIMAT0021641 Glycine max miR159e-3p 16 6.9
ssp-miR159a MIMAT0020292 Saccharum sp. miR159a 16 6.9
csi-miR159 MIMAT0018450 Citrus sinensis miR159 16 6.9
far-miR159 MIMAT0018362 Festuca arundinacea miR159 16 6.9
hvu-miR159a MIMAT0018210 Hordeum vulgare miR159a 16 6.9
hvu-miR159b MIMAT0018209 Hordeum vulgare miR159b 16 6.9
ahy-miR159 MIMAT0016321 Arachis hypogaea miR159 16 6.9
aly-miR159c-3p MIMAT0017428 Arabidopsis lyrata miR159c-3p 16 6.9
aly-miR159b-3p MIMAT0017426 Arabidopsis lyrata miR159b-3p 16 6.9
aly-miR159a-3p MIMAT0017424 Arabidopsis lyrata miR159a-3p 16 6.9
hsv2-miR-H7-3p MIMAT0015375 Herpes Simplex miR-H7-3p 16 6.9
rco-miR159 MIMAT0014152 Ricinus communis miR159 16 6.9
zma-miR159k-3p MIMAT0013980 Zea mays miR159k-3p 16 6.9
zma-miR159j-3p MIMAT0013979 Zea mays miR159j-3p 16 6.9
zma-miR159f-3p MIMAT0013975 Zea mays miR159f-3p 16 6.9
pvu-miR159a.1 MIMAT0015301 Phaseolus vulgaris miR159a.1 16 6.9
mtr-miR159a MIMAT0011166 Medicago truncatula miR159a 16 6.9
bra-miR159a MIMAT0010153 Brassica rapa miR159a 16 6.9
sly-miR159 MIMAT0009141 Solanum lycopersicum miR159 16 6.9
vvi-miR159c MIMAT0005650 Vitis vinifera miR159c 16 6.9
bna-miR159 MIMAT0005635 Brassica napus miR159 16 6.9
tae-miR159b MIMAT0005344 Triticum aestivum miR159b 16 6.9
tae-miR159a MIMAT0005343 Triticum aestivum miR159a 16 6.9
ptc-miR159b MIMAT0001902 Populus trichocarpa miR159b 16 6.9
ptc-miR159a MIMAT0001901 Populus trichocarpa miR159a 16 6.9
zma-miR159b-3p MIMAT0001712 Zea mays miR159b-3p 16 6.9
zma-miR159a-3p MIMAT0001711 Zea mays miR159a-3p 16 6.9
gma-miR159a-3p MIMAT0001675 Glycine max miR159a-3p 16 6.9
sof-miR159e MIMAT0001661 Saccharum officinarum miR159e 16 6.9
sof-miR159d MIMAT0001660 Saccharum officinarum miR159d 16 6.9
sof-miR159b MIMAT0001659 Saccharum officinarum miR159b 16 6.9
sof-miR159a MIMAT0001658 Saccharum officinarum miR159a 16 6.9
sbi-miR159a MIMAT0001468 Sorghum bicolor miR159a 16 6.9
osa-miR159b MIMAT0001023 Oryza sativa miR159b 16 6.9
osa-miR159a.1 MIMAT0001022 Oryza sativa miR159a.1 16 6.9
ath-miR159c MIMAT0001015 Arabidopsis thaliana miR159c 16 6.9
ath-miR159b-3p MIMAT0000207 Arabidopsis thaliana miR159b-3p 16 6.9
ath-miR159a MIMAT0000177 Arabidopsis thaliana miR159a 16 6.9
gra-miR7493b MIMAT0034256 Gossypium raimondii miR7493b 14 27
gra-miR8774 MIMAT0034212 Gossypium raimondii miR8774 14 27
cpa-miR159b MIMAT0031781 Carica papaya miR159b 14 27
ppe-miR393a MIMAT0031474 Prunus persica miR393a 14 27
osa-miR5079b MIMAT0031376 Oryza sativa miR5079b 14 27
osa-miR7692-5p MIMAT0029955 Oryza sativa miR7692-5p 14 27
mdo-miR-7266-5p MIMAT0028500 Monodelphis domestica miR-7266-5p 14 27
cme-miR159b MIMAT0026168 Cucumis melo miR159b 14 27
mdm-miR159b MIMAT0025899 Malus domestica miR159b 14 27
mdm-miR159a MIMAT0025898 Malus domestica miR159a 14 27
bra-miR5717 MIMAT0023014 Brassica rapa miR5717 14 27
ath-miR5632-3p MIMAT0022392 Arabidopsis thaliana miR5632-3p 14 27
osa-miR5490 MIMAT0022123 Oryza sativa miR5490 14 27
aca-miR-5411 MIMAT0022029 Anolis carolinensis miR-5411 14 27
bdi-miR159a-3p MIMAT0020692 Brachypodium distachyon miR159a-3p 14 27
osa-miR5079a MIMAT0020578 Oryza sativa miR5079a 14 27
hsa-miR-5004-3p MIMAT0021028 Homo sapiens miR-5004-3p 14 27
csi-miR393 MIMAT0018460 Citrus sinensis miR393 14 27
aly-miR4246 MIMAT0017935 Arabidopsis lyrata miR4246 14 27
bmo-miR-3303 MIMAT0015491 Bombyx mori miR-3303 14 27
hsv1-miR-H7-3p MIMAT0012596 Herpes Simplex miR-H7-3p 14 27
dsi-miR-976 MIMAT0012502 Drosophila simulans miR-976 14 27
mmu-miR-1897-5p MIMAT0007864 Mus musculus miR-1897-5p 14 27
smo-miR159 MIMAT0005217 Selaginella moellendorffii miR159 14 27
ppt-miR1078 MIMAT0005210 Physcomitrella patens miR1078 14 27
dme-miR-976-3p MIMAT0005492 Drosophila melanogaster miR-976-3p 14 27
pta-miR159c MIMAT0004992 Pinus taeda miR159c 14 27
pta-miR159b MIMAT0004991 Pinus taeda miR159b 14 27
pta-miR159a MIMAT0004990 Pinus taeda miR159a 14 27
ptc-miR159d MIMAT0001904 Populus trichocarpa miR159d 14 27
sbi-miR159b MIMAT0001753 Sorghum bicolor miR159b 14 27
zma-miR159d-3p MIMAT0001714 Zea mays miR159d-3p 14 27
zma-miR159c-3p MIMAT0001713 Zea mays miR159c-3p 14 27
sof-miR159c MIMAT0001662 Saccharum officinarum miR159c 14 27
osa-miR159f MIMAT0001027 Oryza sativa miR159f 14 27
osa-miR159e MIMAT0001026 Oryza sativa miR159e 14 27
osa-miR159d MIMAT0001025 Oryza sativa miR159d 14 27
osa-miR159c MIMAT0001024 Oryza sativa miR159c 14 27
>bra-miR9559-5p MIMAT0035671 Brassica rapa miR9559-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>atr-miR159 MIMAT0033911 Amborella trichopoda miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>cpa-miR159a MIMAT0031780 Carica papaya miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ppe-miR159 MIMAT0031437 Prunus persica miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>bdi-miR159b-3p.1 MIMAT0030086 Brachypodium distachyon
miR159b-3p.1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>mes-miR159b MIMAT0029176 Manihot esculenta miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>cme-miR159a MIMAT0026160 Cucumis melo miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>htu-miR159a MIMAT0025497 Helianthus tuberosus miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>hbr-miR159a MIMAT0025283 Hevea brasiliensis miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>nta-miR159 MIMAT0024639 Nicotiana tabacum miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>lus-miR159c MIMAT0027235 Linum usitatissimum miR159c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>lus-miR159b MIMAT0027233 Linum usitatissimum miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>mes-miR159a MIMAT0024410 Manihot esculenta miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>gma-miR159e-3p MIMAT0021641 Glycine max miR159e-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ssp-miR159a MIMAT0020292 Saccharum sp. miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>csi-miR159 MIMAT0018450 Citrus sinensis miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>far-miR159 MIMAT0018362 Festuca arundinacea miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>hvu-miR159a MIMAT0018210 Hordeum vulgare miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>hvu-miR159b MIMAT0018209 Hordeum vulgare miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ahy-miR159 MIMAT0016321 Arachis hypogaea miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>aly-miR159c-3p MIMAT0017428 Arabidopsis lyrata miR159c-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>aly-miR159b-3p MIMAT0017426 Arabidopsis lyrata miR159b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>aly-miR159a-3p MIMAT0017424 Arabidopsis lyrata miR159a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>hsv2-miR-H7-3p MIMAT0015375 Herpes Simplex miR-H7-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>rco-miR159 MIMAT0014152 Ricinus communis miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>zma-miR159k-3p MIMAT0013980 Zea mays miR159k-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>zma-miR159j-3p MIMAT0013979 Zea mays miR159j-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>zma-miR159f-3p MIMAT0013975 Zea mays miR159f-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>pvu-miR159a.1 MIMAT0015301 Phaseolus vulgaris miR159a.1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>mtr-miR159a MIMAT0011166 Medicago truncatula miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>bra-miR159a MIMAT0010153 Brassica rapa miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sly-miR159 MIMAT0009141 Solanum lycopersicum miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>vvi-miR159c MIMAT0005650 Vitis vinifera miR159c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>bna-miR159 MIMAT0005635 Brassica napus miR159
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>tae-miR159b MIMAT0005344 Triticum aestivum miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>tae-miR159a MIMAT0005343 Triticum aestivum miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ptc-miR159b MIMAT0001902 Populus trichocarpa miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ptc-miR159a MIMAT0001901 Populus trichocarpa miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>zma-miR159b-3p MIMAT0001712 Zea mays miR159b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>zma-miR159a-3p MIMAT0001711 Zea mays miR159a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>gma-miR159a-3p MIMAT0001675 Glycine max miR159a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sof-miR159e MIMAT0001661 Saccharum officinarum miR159e
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sof-miR159d MIMAT0001660 Saccharum officinarum miR159d
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sof-miR159b MIMAT0001659 Saccharum officinarum miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sof-miR159a MIMAT0001658 Saccharum officinarum miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>sbi-miR159a MIMAT0001468 Sorghum bicolor miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>osa-miR159b MIMAT0001023 Oryza sativa miR159b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>osa-miR159a.1 MIMAT0001022 Oryza sativa miR159a.1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ath-miR159c MIMAT0001015 Arabidopsis thaliana miR159c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ath-miR159b-3p MIMAT0000207 Arabidopsis thaliana miR159b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>ath-miR159a MIMAT0000177 Arabidopsis thaliana miR159a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggatt 8
||||||||
Sbjct: 1 tttggatt 8
>gra-miR7493b MIMAT0034256 Gossypium raimondii miR7493b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>gra-miR8774 MIMAT0034212 Gossypium raimondii miR8774
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>cpa-miR159b MIMAT0031781 Carica papaya miR159b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>ppe-miR393a MIMAT0031474 Prunus persica miR393a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggat 7
|||||||
Sbjct: 8 tttggat 2
>osa-miR5079b MIMAT0031376 Oryza sativa miR5079b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 1 tttggat 7
>osa-miR7692-5p MIMAT0029955 Oryza sativa miR7692-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggat 7
|||||||
Sbjct: 8 tttggat 2
>mdo-miR-7266-5p MIMAT0028500 Monodelphis domestica miR-7266-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttggatt 8
|||||||
Sbjct: 7 ttggatt 1
>cme-miR159b MIMAT0026168 Cucumis melo miR159b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>mdm-miR159b MIMAT0025899 Malus domestica miR159b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>mdm-miR159a MIMAT0025898 Malus domestica miR159a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>bra-miR5717 MIMAT0023014 Brassica rapa miR5717
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 2 tttggat 8
>ath-miR5632-3p MIMAT0022392 Arabidopsis thaliana miR5632-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>osa-miR5490 MIMAT0022123 Oryza sativa miR5490
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>aca-miR-5411 MIMAT0022029 Anolis carolinensis miR-5411
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 1 tttggat 7
>bdi-miR159a-3p MIMAT0020692 Brachypodium distachyon miR159a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>osa-miR5079a MIMAT0020578 Oryza sativa miR5079a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 1 tttggat 7
>hsa-miR-5004-3p MIMAT0021028 Homo sapiens miR-5004-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>csi-miR393 MIMAT0018460 Citrus sinensis miR393
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggat 7
|||||||
Sbjct: 7 tttggat 1
>aly-miR4246 MIMAT0017935 Arabidopsis lyrata miR4246
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttggatt 8
|||||||
Sbjct: 8 ttggatt 2
>bmo-miR-3303 MIMAT0015491 Bombyx mori miR-3303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>hsv1-miR-H7-3p MIMAT0012596 Herpes Simplex miR-H7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 1 tttggat 7
>dsi-miR-976 MIMAT0012502 Drosophila simulans miR-976
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>mmu-miR-1897-5p MIMAT0007864 Mus musculus miR-1897-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 2 tttggat 8
>smo-miR159 MIMAT0005217 Selaginella moellendorffii miR159
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>ppt-miR1078 MIMAT0005210 Physcomitrella patens miR1078
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggat 7
|||||||
Sbjct: 1 tttggat 7
>dme-miR-976-3p MIMAT0005492 Drosophila melanogaster miR-976-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>pta-miR159c MIMAT0004992 Pinus taeda miR159c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>pta-miR159b MIMAT0004991 Pinus taeda miR159b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>pta-miR159a MIMAT0004990 Pinus taeda miR159a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 1 ttggatt 7
>ptc-miR159d MIMAT0001904 Populus trichocarpa miR159d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>sbi-miR159b MIMAT0001753 Sorghum bicolor miR159b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>zma-miR159d-3p MIMAT0001714 Zea mays miR159d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>zma-miR159c-3p MIMAT0001713 Zea mays miR159c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>sof-miR159c MIMAT0001662 Saccharum officinarum miR159c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>osa-miR159f MIMAT0001027 Oryza sativa miR159f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>osa-miR159e MIMAT0001026 Oryza sativa miR159e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>osa-miR159d MIMAT0001025 Oryza sativa miR159d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
>osa-miR159c MIMAT0001024 Oryza sativa miR159c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggatt 8
|||||||
Sbjct: 2 ttggatt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 424
Number of extensions: 284
Number of successful extensions: 247
Number of sequences better than 100.0: 89
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 89
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
