BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s49
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR482c MIMAT0034205 Gossypium raimondii miR482c 14 20
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p 14 20
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p 14 20
hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p 14 20
ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471 14 20
mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352 14 20
gma-miR393b MIMAT0023170 Glycine max miR393b 14 20
mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p 14 20
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p 14 20
vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p 14 20
aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241 14 20
aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p 14 20
aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p 14 20
mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a 14 20
hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3 14 20
mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p 14 20
ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p 14 20
ssc-miR-9857-5p MIMAT0037076 Sus scrofa miR-9857-5p 12 80
oha-miR-150 MIMAT0036736 Ophiophagus hannah miR-150 12 80
chi-miR-186-3p MIMAT0036011 Capra hircus miR-186-3p 12 80
chi-miR-150 MIMAT0035980 Capra hircus miR-150 12 80
dvi-miR-193-5p MIMAT0035562 Drosophila virilis miR-193-5p 12 80
bdi-miR9482 MIMAT0035488 Brachypodium distachyon miR9482 12 80
sly-miR9477-3p MIMAT0035472 Solanum lycopersicum miR9477-3p 12 80
dme-miR-9370-5p MIMAT0035203 Drosophila melanogaster miR-9370-5p 12 80
efu-miR-150 MIMAT0035077 Eptesicus fuscus miR-150 12 80
efu-miR-9313 MIMAT0034988 Eptesicus fuscus miR-9313 12 80
cfa-miR-8849 MIMAT0034344 Canis familiaris miR-8849 12 80
atr-miR8570 MIMAT0033852 Amborella trichopoda miR8570 12 80
ssa-miR-150-5p MIMAT0032383 Salmo salar miR-150-5p 12 80
rgl-miR7807a-3p MIMAT0032251 Rehmannia glutinosa miR7807a-3p 12 80
oar-miR-150 MIMAT0030034 Ovis aries miR-150 12 80
ipu-miR-129b MIMAT0029544 Ictalurus punctatus miR-129b 12 80
ipu-miR-150 MIMAT0029426 Ictalurus punctatus miR-150 12 80
lja-miR7545 MIMAT0029372 Lotus japonicus miR7545 12 80
mdo-miR-7341-5p MIMAT0028692 Monodelphis domestica miR-7341-5p 12 80
mdo-miR-7266-3p MIMAT0028501 Monodelphis domestica miR-7266-3p 12 80
dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p 12 80
mmu-miR-6903-5p MIMAT0027706 Mus musculus miR-6903-5p 12 80
hsa-miR-6814-5p MIMAT0027528 Homo sapiens miR-6814-5p 12 80
hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p 12 80
hsa-miR-6740-5p MIMAT0027381 Homo sapiens miR-6740-5p 12 80
hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p 12 80
gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p 12 80
ssc-miR-150 MIMAT0025365 Sus scrofa miR-150 12 80
ppe-miR482c-3p MIMAT0031169 Prunus persica miR482c-3p 12 80
ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p 12 80
ggo-miR-150 MIMAT0024217 Gorilla gorilla miR-150 12 80
cgr-miR-450b-3p MIMAT0023963 Cricetulus griseus miR-450b-3p 12 80
sha-miR-150 MIMAT0022806 Sarcophilus harrisii miR-150 12 80
ola-miR-150 MIMAT0022584 Oryzias latipes miR-150 12 80
mmu-miR-5710 MIMAT0022505 Mus musculus miR-5710 12 80
aca-miR-150-5p MIMAT0021784 Anolis carolinensis miR-150-5p 12 80
mmu-miR-5127 MIMAT0020638 Mus musculus miR-5127 12 80
mmu-miR-5120 MIMAT0020628 Mus musculus miR-5120 12 80
ath-miR5019 MIMAT0020523 Arabidopsis thaliana miR5019 12 80
gma-miR482c-3p MIMAT0021002 Glycine max miR482c-3p 12 80
sko-miR-4817-5p MIMAT0020008 Saccoglossus kowalevskii miR-4817-5p 12 80
hsa-miR-4733-5p MIMAT0019857 Homo sapiens miR-4733-5p 12 80
hsa-miR-4425 MIMAT0018940 Homo sapiens miR-4425 12 80
ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739 12 80
cin-miR-4031-5p MIMAT0016551 Ciona intestinalis miR-4031-5p 12 80
ppy-miR-1302 MIMAT0016222 Pongo pygmaeus miR-1302 12 80
ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p 12 80
ppy-miR-150 MIMAT0015774 Pongo pygmaeus miR-150 12 80
aly-miR3444a-5p MIMAT0017721 Arabidopsis lyrata miR3444a-5p 12 80
aly-miR774b-3p MIMAT0017700 Arabidopsis lyrata miR774b-3p 12 80
bmo-miR-3367 MIMAT0015553 Bombyx mori miR-3367 12 80
mmu-miR-3100-5p MIMAT0014919 Mus musculus miR-3100-5p 12 80
api-miR-3024 MIMAT0014760 Acyrthosiphon pisum miR-3024 12 80
hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12 12 80
ssc-miR-450b-3p MIMAT0017380 Sus scrofa miR-450b-3p 12 80
eca-miR-450b-3p MIMAT0013221 Equus caballus miR-450b-3p 12 80
eca-miR-150 MIMAT0013011 Equus caballus miR-150 12 80
eca-miR-1302e MIMAT0013010 Equus caballus miR-1302e 12 80
eca-miR-1302d MIMAT0012969 Equus caballus miR-1302d 12 80
eca-miR-1302b MIMAT0012934 Equus caballus miR-1302b 12 80
eca-miR-1302 MIMAT0012907 Equus caballus miR-1302 12 80
mdo-miR-150-5p MIMAT0012748 Monodelphis domestica miR-150-5p 12 80
dsi-miR-991-5p MIMAT0012429 Drosophila simulans miR-991-5p 12 80
dps-miR-193-5p MIMAT0012277 Drosophila pseudoobscura miR-193-5p 12 80
dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster miR-2492-5p 12 80
bta-miR-2284h-5p MIMAT0012019 Bos taurus miR-2284h-5p 12 80
zma-miR2118f MIMAT0011765 Zea mays miR2118f 12 80
osa-miR2118r MIMAT0011757 Oryza sativa miR2118r 12 80
osa-miR2118e MIMAT0011744 Oryza sativa miR2118e 12 80
mdm-miR482a-3p MIMAT0011165 Malus domestica miR482a-3p 12 80
mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p 12 80
ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b 12 80
ptr-miR-150 MIMAT0008044 Pan troglodytes miR-150 12 80
ptr-miR-1302 MIMAT0008021 Pan troglodytes miR-1302 12 80
cfa-miR-150 MIMAT0006602 Canis familiaris miR-150 12 80
mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p 12 80
mml-miR-186-3p MIMAT0026832 Macaca mulatta miR-186-3p 12 80
mml-miR-150-5p MIMAT0006211 Macaca mulatta miR-150-5p 12 80
gga-miR-1569 MIMAT0007429 Gallus gallus miR-1569 12 80
oan-miR-150-5p MIMAT0007090 Ornithorhynchus anatinus miR-150-5p 12 80
oan-miR-186-3p MIMAT0006932 Ornithorhynchus anatinus miR-186-3p 12 80
ssy-miR-513c MIMAT0005758 Symphalangus syndactylus miR-513c 12 80
hsa-miR-1302 MIMAT0005890 Homo sapiens miR-1302 12 80
ppt-miR1039-5p MIMAT0005148 Physcomitrella patens miR1039-5p 12 80
dme-miR-997-5p MIMAT0005517 Drosophila melanogaster miR-997-5p 12 80
dme-miR-991-5p MIMAT0020890 Drosophila melanogaster miR-991-5p 12 80
dme-miR-193-5p MIMAT0020849 Drosophila melanogaster miR-193-5p 12 80
hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p 12 80
mdo-miR-186-3p MIMAT0026676 Monodelphis domestica miR-186-3p 12 80
bta-miR-150 MIMAT0003845 Bos taurus miR-150 12 80
xtr-miR-150 MIMAT0003606 Xenopus tropicalis miR-150 12 80
ptc-miR171h-5p MIMAT0022903 Populus trichocarpa miR171h-5p 12 80
ptc-miR171g-5p MIMAT0022902 Populus trichocarpa miR171g-5p 12 80
dre-miR-150 MIMAT0001846 Danio rerio miR-150 12 80
rno-miR-450a-3p MIMAT0017183 Rattus norvegicus miR-450a-3p 12 80
rno-miR-150-5p MIMAT0000853 Rattus norvegicus miR-150-5p 12 80
hsa-miR-150-5p MIMAT0000451 Homo sapiens miR-150-5p 12 80
mmu-miR-150-5p MIMAT0000160 Mus musculus miR-150-5p 12 80
>gra-miR482c MIMAT0034205 Gossypium raimondii miR482c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 8 tttggga 2
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>gma-miR393b MIMAT0023170 Glycine max miR393b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 2 tttggga 8
>aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>ssc-miR-9857-5p MIMAT0037076 Sus scrofa miR-9857-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>oha-miR-150 MIMAT0036736 Ophiophagus hannah miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>chi-miR-186-3p MIMAT0036011 Capra hircus miR-186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>chi-miR-150 MIMAT0035980 Capra hircus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>dvi-miR-193-5p MIMAT0035562 Drosophila virilis miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>bdi-miR9482 MIMAT0035488 Brachypodium distachyon miR9482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 3 tttggg 8
>sly-miR9477-3p MIMAT0035472 Solanum lycopersicum miR9477-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>dme-miR-9370-5p MIMAT0035203 Drosophila melanogaster
miR-9370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 1 tttggg 6
>efu-miR-150 MIMAT0035077 Eptesicus fuscus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>efu-miR-9313 MIMAT0034988 Eptesicus fuscus miR-9313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 1 tttggg 6
>cfa-miR-8849 MIMAT0034344 Canis familiaris miR-8849
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>atr-miR8570 MIMAT0033852 Amborella trichopoda miR8570
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>ssa-miR-150-5p MIMAT0032383 Salmo salar miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>rgl-miR7807a-3p MIMAT0032251 Rehmannia glutinosa miR7807a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>oar-miR-150 MIMAT0030034 Ovis aries miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ipu-miR-129b MIMAT0029544 Ictalurus punctatus miR-129b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 1 tttggg 6
>ipu-miR-150 MIMAT0029426 Ictalurus punctatus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>lja-miR7545 MIMAT0029372 Lotus japonicus miR7545
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>mdo-miR-7341-5p MIMAT0028692 Monodelphis domestica miR-7341-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>mdo-miR-7266-3p MIMAT0028501 Monodelphis domestica miR-7266-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>dev-miR-D1-5p MIMAT0028169 Duck enteritis miR-D1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>mmu-miR-6903-5p MIMAT0027706 Mus musculus miR-6903-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>hsa-miR-6814-5p MIMAT0027528 Homo sapiens miR-6814-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 6 ttggga 1
>hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>hsa-miR-6740-5p MIMAT0027381 Homo sapiens miR-6740-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 3 tttggg 8
>hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ssc-miR-150 MIMAT0025365 Sus scrofa miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ppe-miR482c-3p MIMAT0031169 Prunus persica miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ggo-miR-150 MIMAT0024217 Gorilla gorilla miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>cgr-miR-450b-3p MIMAT0023963 Cricetulus griseus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>sha-miR-150 MIMAT0022806 Sarcophilus harrisii miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ola-miR-150 MIMAT0022584 Oryzias latipes miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>mmu-miR-5710 MIMAT0022505 Mus musculus miR-5710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>aca-miR-150-5p MIMAT0021784 Anolis carolinensis miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>mmu-miR-5127 MIMAT0020638 Mus musculus miR-5127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>mmu-miR-5120 MIMAT0020628 Mus musculus miR-5120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 1 tttggg 6
>ath-miR5019 MIMAT0020523 Arabidopsis thaliana miR5019
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>gma-miR482c-3p MIMAT0021002 Glycine max miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>sko-miR-4817-5p MIMAT0020008 Saccoglossus kowalevskii
miR-4817-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>hsa-miR-4733-5p MIMAT0019857 Homo sapiens miR-4733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>hsa-miR-4425 MIMAT0018940 Homo sapiens miR-4425
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>cin-miR-4031-5p MIMAT0016551 Ciona intestinalis miR-4031-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>ppy-miR-1302 MIMAT0016222 Pongo pygmaeus miR-1302
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ppy-miR-150 MIMAT0015774 Pongo pygmaeus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>aly-miR3444a-5p MIMAT0017721 Arabidopsis lyrata miR3444a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>aly-miR774b-3p MIMAT0017700 Arabidopsis lyrata miR774b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 8 tttggg 3
>bmo-miR-3367 MIMAT0015553 Bombyx mori miR-3367
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 1 tttggg 6
>mmu-miR-3100-5p MIMAT0014919 Mus musculus miR-3100-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>api-miR-3024 MIMAT0014760 Acyrthosiphon pisum miR-3024
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 3 tttggg 8
>hsv1-miR-H12 MIMAT0014689 Herpes Simplex miR-H12
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ssc-miR-450b-3p MIMAT0017380 Sus scrofa miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>eca-miR-450b-3p MIMAT0013221 Equus caballus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>eca-miR-150 MIMAT0013011 Equus caballus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>eca-miR-1302e MIMAT0013010 Equus caballus miR-1302e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>eca-miR-1302d MIMAT0012969 Equus caballus miR-1302d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>eca-miR-1302b MIMAT0012934 Equus caballus miR-1302b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>eca-miR-1302 MIMAT0012907 Equus caballus miR-1302
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>mdo-miR-150-5p MIMAT0012748 Monodelphis domestica miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>dsi-miR-991-5p MIMAT0012429 Drosophila simulans miR-991-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>dps-miR-193-5p MIMAT0012277 Drosophila pseudoobscura miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster
miR-2492-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>bta-miR-2284h-5p MIMAT0012019 Bos taurus miR-2284h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>zma-miR2118f MIMAT0011765 Zea mays miR2118f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>osa-miR2118r MIMAT0011757 Oryza sativa miR2118r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>osa-miR2118e MIMAT0011744 Oryza sativa miR2118e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>mdm-miR482a-3p MIMAT0011165 Malus domestica miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ptr-miR-150 MIMAT0008044 Pan troglodytes miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ptr-miR-1302 MIMAT0008021 Pan troglodytes miR-1302
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>cfa-miR-150 MIMAT0006602 Canis familiaris miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>mml-miR-186-3p MIMAT0026832 Macaca mulatta miR-186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>mml-miR-150-5p MIMAT0006211 Macaca mulatta miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>gga-miR-1569 MIMAT0007429 Gallus gallus miR-1569
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 3 tttggg 8
>oan-miR-150-5p MIMAT0007090 Ornithorhynchus anatinus miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>oan-miR-186-3p MIMAT0006932 Ornithorhynchus anatinus miR-186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>ssy-miR-513c MIMAT0005758 Symphalangus syndactylus miR-513c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 7 ttggga 2
>hsa-miR-1302 MIMAT0005890 Homo sapiens miR-1302
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>ppt-miR1039-5p MIMAT0005148 Physcomitrella patens miR1039-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttggg 6
||||||
Sbjct: 3 tttggg 8
>dme-miR-997-5p MIMAT0005517 Drosophila melanogaster miR-997-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>dme-miR-991-5p MIMAT0020890 Drosophila melanogaster miR-991-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>dme-miR-193-5p MIMAT0020849 Drosophila melanogaster miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 1 ttggga 6
>mdo-miR-186-3p MIMAT0026676 Monodelphis domestica miR-186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttggg 6
||||||
Sbjct: 6 tttggg 1
>bta-miR-150 MIMAT0003845 Bos taurus miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>xtr-miR-150 MIMAT0003606 Xenopus tropicalis miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>ptc-miR171h-5p MIMAT0022903 Populus trichocarpa miR171h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>ptc-miR171g-5p MIMAT0022902 Populus trichocarpa miR171g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>dre-miR-150 MIMAT0001846 Danio rerio miR-150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>rno-miR-450a-3p MIMAT0017183 Rattus norvegicus miR-450a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttggga 7
||||||
Sbjct: 3 ttggga 8
>rno-miR-150-5p MIMAT0000853 Rattus norvegicus miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>hsa-miR-150-5p MIMAT0000451 Homo sapiens miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
>mmu-miR-150-5p MIMAT0000160 Mus musculus miR-150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttggga 7
||||||
Sbjct: 8 ttggga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 135
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
