BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3 16 6.9
oha-miR-150 MIMAT0036736 Ophiophagus hannah miR-150 14 27
chi-miR-150 MIMAT0035980 Capra hircus miR-150 14 27
efu-miR-150 MIMAT0035077 Eptesicus fuscus miR-150 14 27
gra-miR482c MIMAT0034205 Gossypium raimondii miR482c 14 27
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p 14 27
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p 14 27
ssa-miR-150-5p MIMAT0032383 Salmo salar miR-150-5p 14 27
oar-miR-150 MIMAT0030034 Ovis aries miR-150 14 27
ipu-miR-150 MIMAT0029426 Ictalurus punctatus miR-150 14 27
hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p 14 27
hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p 14 27
ssc-miR-150 MIMAT0025365 Sus scrofa miR-150 14 27
ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471 14 27
mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352 14 27
ggo-miR-150 MIMAT0024217 Gorilla gorilla miR-150 14 27
gma-miR393b MIMAT0023170 Glycine max miR393b 14 27
sha-miR-150 MIMAT0022806 Sarcophilus harrisii miR-150 14 27
ola-miR-150 MIMAT0022584 Oryzias latipes miR-150 14 27
aca-miR-150-5p MIMAT0021784 Anolis carolinensis miR-150-5p 14 27
mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p 14 27
mmu-miR-5127 MIMAT0020638 Mus musculus miR-5127 14 27
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p 14 27
ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739 14 27
vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p 14 27
aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241 14 27
ppy-miR-150 MIMAT0015774 Pongo pygmaeus miR-150 14 27
aly-miR3444a-5p MIMAT0017721 Arabidopsis lyrata miR3444a-5p 14 27
aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p 14 27
aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p 14 27
eca-miR-150 MIMAT0013011 Equus caballus miR-150 14 27
mdo-miR-150-5p MIMAT0012748 Monodelphis domestica miR-150-5p 14 27
mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a 14 27
mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p 14 27
ptr-miR-150 MIMAT0008044 Pan troglodytes miR-150 14 27
cfa-miR-150 MIMAT0006602 Canis familiaris miR-150 14 27
mml-miR-150-5p MIMAT0006211 Macaca mulatta miR-150-5p 14 27
oan-miR-150-5p MIMAT0007090 Ornithorhynchus anatinus miR-150-5p 14 27
mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p 14 27
hsa-miR-887-5p MIMAT0026720 Homo sapiens miR-887-5p 14 27
bta-miR-150 MIMAT0003845 Bos taurus miR-150 14 27
xtr-miR-150 MIMAT0003606 Xenopus tropicalis miR-150 14 27
dre-miR-150 MIMAT0001846 Danio rerio miR-150 14 27
rno-miR-150-5p MIMAT0000853 Rattus norvegicus miR-150-5p 14 27
hsa-miR-150-5p MIMAT0000451 Homo sapiens miR-150-5p 14 27
ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p 14 27
mmu-miR-150-5p MIMAT0000160 Mus musculus miR-150-5p 14 27
>hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttgggag 8
||||||||
Sbjct: 1 tttgggag 8
>oha-miR-150 MIMAT0036736 Ophiophagus hannah miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>chi-miR-150 MIMAT0035980 Capra hircus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>efu-miR-150 MIMAT0035077 Eptesicus fuscus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>gra-miR482c MIMAT0034205 Gossypium raimondii miR482c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 8 tttggga 2
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ssa-miR-150-5p MIMAT0032383 Salmo salar miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>oar-miR-150 MIMAT0030034 Ovis aries miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>ipu-miR-150 MIMAT0029426 Ictalurus punctatus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgggag 8
|||||||
Sbjct: 1 ttgggag 7
>hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ssc-miR-150 MIMAT0025365 Sus scrofa miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ggo-miR-150 MIMAT0024217 Gorilla gorilla miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>gma-miR393b MIMAT0023170 Glycine max miR393b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>sha-miR-150 MIMAT0022806 Sarcophilus harrisii miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>ola-miR-150 MIMAT0022584 Oryzias latipes miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>aca-miR-150-5p MIMAT0021784 Anolis carolinensis miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-5127 MIMAT0020638 Mus musculus miR-5127
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgggag 8
|||||||
Sbjct: 1 ttgggag 7
>vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 2 tttggga 8
>ppy-miR-150 MIMAT0015774 Pongo pygmaeus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>aly-miR3444a-5p MIMAT0017721 Arabidopsis lyrata miR3444a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgggag 8
|||||||
Sbjct: 1 ttgggag 7
>aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>eca-miR-150 MIMAT0013011 Equus caballus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>mdo-miR-150-5p MIMAT0012748 Monodelphis domestica miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgggag 8
|||||||
Sbjct: 1 ttgggag 7
>ptr-miR-150 MIMAT0008044 Pan troglodytes miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>cfa-miR-150 MIMAT0006602 Canis familiaris miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>mml-miR-150-5p MIMAT0006211 Macaca mulatta miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>oan-miR-150-5p MIMAT0007090 Ornithorhynchus anatinus miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggga 7
|||||||
Sbjct: 1 tttggga 7
>hsa-miR-887-5p MIMAT0026720 Homo sapiens miR-887-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgggag 8
|||||||
Sbjct: 2 ttgggag 8
>bta-miR-150 MIMAT0003845 Bos taurus miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>xtr-miR-150 MIMAT0003606 Xenopus tropicalis miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>dre-miR-150 MIMAT0001846 Danio rerio miR-150
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>rno-miR-150-5p MIMAT0000853 Rattus norvegicus miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>hsa-miR-150-5p MIMAT0000451 Homo sapiens miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
>ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggga 7
|||||||
Sbjct: 7 tttggga 1
>mmu-miR-150-5p MIMAT0000160 Mus musculus miR-150-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgggag 8
|||||||
Sbjct: 8 ttgggag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 285
Number of extensions: 237
Number of successful extensions: 163
Number of sequences better than 100.0: 47
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 47
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
