BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-12
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782 16 6.9
gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p 16 6.9
tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p 16 6.9
mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus miR-M1-12-3p 16 6.9
cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p 16 6.9
dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura miR-2548-3p 16 6.9
ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p 14 27
dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p 14 27
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257 14 27
prd-miR-9b-5p MIMAT0030576 Panagrellus redivivus miR-9b-5p 14 27
bdi-miR7751-3p MIMAT0030243 Brachypodium distachyon miR7751-3p 14 27
rno-miR-6331 MIMAT0025070 Rattus norvegicus miR-6331 14 27
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971 14 27
osa-miR5073 MIMAT0020555 Oryza sativa miR5073 14 27
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015 14 27
pma-miR-4561 MIMAT0019593 Petromyzon marinus miR-4561 14 27
tca-miR-9d-5p MIMAT0018748 Tribolium castaneum miR-9d-5p 14 27
ame-miR-971 MIMAT0018544 Apis mellifera miR-971 14 27
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971 14 27
cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711 14 27
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p 14 27
crm-miR-79-5p MIMAT0011555 Caenorhabditis remanei miR-79-5p 14 27
smo-miR1115-3p MIMAT0005274 Selaginella moellendorffii miR1115-3p 14 27
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p 14 27
cel-miR-79-5p MIMAT0020322 Caenorhabditis elegans miR-79-5p 14 27
>gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggtgt 8
||||||||
Sbjct: 1 tttggtgt 8
>gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggtgt 8
||||||||
Sbjct: 1 tttggtgt 8
>tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tttggtgt 8
||||||||
Sbjct: 8 tttggtgt 1
>mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus
miR-M1-12-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggtgt 8
||||||||
Sbjct: 1 tttggtgt 8
>cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggtgt 8
||||||||
Sbjct: 1 tttggtgt 8
>dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura
miR-2548-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttggtgt 8
||||||||
Sbjct: 1 tttggtgt 8
>ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>prd-miR-9b-5p MIMAT0030576 Panagrellus redivivus miR-9b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
>bdi-miR7751-3p MIMAT0030243 Brachypodium distachyon miR7751-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 1 tttggtg 7
>rno-miR-6331 MIMAT0025070 Rattus norvegicus miR-6331
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>osa-miR5073 MIMAT0020555 Oryza sativa miR5073
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>pma-miR-4561 MIMAT0019593 Petromyzon marinus miR-4561
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 1 tttggtg 7
>tca-miR-9d-5p MIMAT0018748 Tribolium castaneum miR-9d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>crm-miR-79-5p MIMAT0011555 Caenorhabditis remanei miR-79-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
>smo-miR1115-3p MIMAT0005274 Selaginella moellendorffii
miR1115-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttggtg 7
|||||||
Sbjct: 8 tttggtg 2
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgt 8
|||||||
Sbjct: 1 ttggtgt 7
>cel-miR-79-5p MIMAT0020322 Caenorhabditis elegans miR-79-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttggtg 7
|||||||
Sbjct: 2 tttggtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 329
Number of extensions: 298
Number of successful extensions: 278
Number of sequences better than 100.0: 25
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
