BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s77
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-5688 MIMAT0022479 Homo sapiens miR-5688 14 20
osa-miR5513 MIMAT0022146 Oryza sativa miR5513 14 20
ath-miR5017-5p MIMAT0032120 Arabidopsis thaliana miR5017-5p 14 20
dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster miR-4967-3p 14 20
ath-miR4239 MIMAT0017947 Arabidopsis thaliana miR4239 14 20
bmo-miR-3358 MIMAT0015544 Bombyx mori miR-3358 14 20
dps-miR-2575-5p MIMAT0012420 Drosophila pseudoobscura miR-2575-5p 14 20
ata-miR2275a-3p MIMAT0037111 Aegilops tauschii miR2275a-3p 12 80
tae-miR9773 MIMAT0036983 Triticum aestivum miR9773 12 80
gra-miR827b MIMAT0036968 Gossypium raimondii miR827b 12 80
oha-miR-7-3-3p MIMAT0036948 Ophiophagus hannah miR-7-3-3p 12 80
oha-miR-375-3p MIMAT0036918 Ophiophagus hannah miR-375-3p 12 80
chi-miR-7-3p MIMAT0036289 Capra hircus miR-7-3p 12 80
chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p 12 80
chi-miR-544-5p MIMAT0036276 Capra hircus miR-544-5p 12 80
chi-miR-1814 MIMAT0036000 Capra hircus miR-1814 12 80
dvi-miR-375-3p MIMAT0035569 Drosophila virilis miR-375-3p 12 80
cfa-miR-8881 MIMAT0034381 Canis familiaris miR-8881 12 80
gra-miR8762d MIMAT0034214 Gossypium raimondii miR8762d 12 80
gra-miR7502c MIMAT0034014 Gossypium raimondii miR7502c 12 80
gra-miR7502b MIMAT0034013 Gossypium raimondii miR7502b 12 80
ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p 12 80
ppc-miR-8240-3p MIMAT0032937 Pristionchus pacificus miR-8240-3p 12 80
ssa-miR-375-3p MIMAT0032626 Salmo salar miR-375-3p 12 80
bbe-miR-375-3p MIMAT0031676 Branchiostoma belcheri miR-375-3p 12 80
stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p 12 80
hsa-miR-8068 MIMAT0030995 Homo sapiens miR-8068 12 80
bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p 12 80
pmi-miR-375-3p MIMAT0032173 Patiria miniata miR-375-3p 12 80
sci-miR-7642-5p MIMAT0029783 Sycon ciliatum miR-7642-5p 12 80
cbn-miR-355 MIMAT0029771 Caenorhabditis brenneri miR-355 12 80
cbn-miR-356 MIMAT0029679 Caenorhabditis brenneri miR-356 12 80
ipu-miR-375 MIMAT0029508 Ictalurus punctatus miR-375 12 80
ssc-miR-7142-3p MIMAT0028160 Sus scrofa miR-7142-3p 12 80
sbi-miR6230-3p MIMAT0026437 Sorghum bicolor miR6230-3p 12 80
ccr-miR-459-5p MIMAT0026304 Cyprinus carpio miR-459-5p 12 80
ccr-miR-375 MIMAT0026295 Cyprinus carpio miR-375 12 80
meu-miR-6313 MIMAT0025021 Macropus eugenii miR-6313 12 80
ggo-miR-375 MIMAT0024189 Gorilla gorilla miR-375 12 80
osa-miR5827 MIMAT0023301 Oryza sativa miR5827 12 80
ath-miR833b MIMAT0022419 Arabidopsis thaliana miR833b 12 80
cel-miR-356b-3p MIMAT0022312 Caenorhabditis elegans miR-356b-3p 12 80
aca-miR-375-3p MIMAT0021951 Anolis carolinensis miR-375-3p 12 80
asu-miR-375-3p MIMAT0021526 Ascaris suum miR-375-3p 12 80
mmu-miR-5101 MIMAT0020608 Mus musculus miR-5101 12 80
pma-miR-4576 MIMAT0019609 Petromyzon marinus miR-4576 12 80
pma-miR-375b-3p MIMAT0019545 Petromyzon marinus miR-375b-3p 12 80
pma-miR-375a-3p MIMAT0019543 Petromyzon marinus miR-375a-3p 12 80
oar-miR-544-5p MIMAT0019298 Ovis aries miR-544-5p 12 80
ngi-miR-375 MIMAT0018384 Nasonia giraulti miR-375 12 80
gma-miR4409 MIMAT0018328 Glycine max miR4409 12 80
gma-miR4408 MIMAT0018327 Glycine max miR4408 12 80
gma-miR4364b MIMAT0018234 Glycine max miR4364b 12 80
tca-miR-375-3p MIMAT0018795 Tribolium castaneum miR-375-3p 12 80
cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p 12 80
cin-miR-4154-3p MIMAT0016758 Ciona intestinalis miR-4154-3p 12 80
cin-miR-4072-5p MIMAT0016632 Ciona intestinalis miR-4072-5p 12 80
rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p 12 80
ppy-miR-375 MIMAT0015863 Pongo pygmaeus miR-375 12 80
nvi-miR-375 MIMAT0015699 Nasonia vitripennis miR-375 12 80
aly-miR852-5p MIMAT0017639 Arabidopsis lyrata miR852-5p 12 80
aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p 12 80
bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p 12 80
hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p 12 80
mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p 12 80
tgu-miR-375 MIMAT0014572 Taeniopygia guttata miR-375 12 80
cqu-miR-375 MIMAT0014443 Culex quinquefasciatus miR-375 12 80
aae-miR-375 MIMAT0014298 Aedes aegypti miR-375 12 80
zma-miR827-5p MIMAT0015365 Zea mays miR827-5p 12 80
eca-miR-545 MIMAT0013239 Equus caballus miR-545 12 80
bmo-miR-375-3p MIMAT0013649 Bombyx mori miR-375-3p 12 80
isc-miR-375 MIMAT0012700 Ixodes scapularis miR-375 12 80
dpu-miR-375 MIMAT0012664 Daphnia pulex miR-375 12 80
dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a 12 80
dsi-miR-375-3p MIMAT0012490 Drosophila simulans miR-375-3p 12 80
dps-miR-375-3p MIMAT0012254 Drosophila pseudoobscura miR-375-3p 12 80
bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c 12 80
bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a 12 80
bta-miR-2310 MIMAT0011822 Bos taurus miR-2310 12 80
zma-miR2275d-3p MIMAT0011774 Zea mays miR2275d-3p 12 80
zma-miR2275a-3p MIMAT0011768 Zea mays miR2275a-3p 12 80
crm-miR-356 MIMAT0011611 Caenorhabditis remanei miR-356 12 80
crm-miR-355 MIMAT0011535 Caenorhabditis remanei miR-355 12 80
cfa-miR-375 MIMAT0009871 Canis familiaris miR-375 12 80
sko-miR-375 MIMAT0009683 Saccoglossus kowalevskii miR-375 12 80
lgi-miR-375 MIMAT0009676 Lottia gigantea miR-375 12 80
cte-miR-375 MIMAT0009544 Capitella teleta miR-375 12 80
ptr-miR-375 MIMAT0008125 Pan troglodytes miR-375 12 80
aga-miR-375 MIMAT0007860 Anopheles gambiae miR-375 12 80
mml-miR-375 MIMAT0006302 Macaca mulatta miR-375 12 80
gga-miR-1808 MIMAT0007726 Gallus gallus miR-1808 12 80
cin-miR-126-5p MIMAT0015258 Ciona intestinalis miR-126-5p 12 80
xtr-miR-375 MIMAT0005565 Xenopus tropicalis miR-375 12 80
rno-miR-375-3p MIMAT0005307 Rattus norvegicus miR-375-3p 12 80
smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii miR1112-5p 12 80
dme-miR-375-3p MIMAT0005472 Drosophila melanogaster miR-375-3p 12 80
ame-miR-375 MIMAT0004431 Apis mellifera miR-375 12 80
mmu-miR-544-5p MIMAT0017282 Mus musculus miR-544-5p 12 80
ath-miR833a-5p MIMAT0004252 Arabidopsis thaliana miR833a-5p 12 80
gga-miR-375 MIMAT0003362 Gallus gallus miR-375 12 80
tni-miR-375 MIMAT0003070 Tetraodon nigroviridis miR-375 12 80
fru-miR-375 MIMAT0003069 Fugu rubripes miR-375 12 80
dre-miR-375 MIMAT0001876 Danio rerio miR-375 12 80
zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p 12 80
cbr-miR-355 MIMAT0001319 Caenorhabditis briggsae miR-355 12 80
osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p 12 80
mmu-miR-375-3p MIMAT0000739 Mus musculus miR-375-3p 12 80
hsa-miR-375 MIMAT0000728 Homo sapiens miR-375 12 80
cel-miR-355-5p MIMAT0000697 Caenorhabditis elegans miR-355-5p 12 80
rno-miR-7a-1-3p MIMAT0000607 Rattus norvegicus miR-7a-1-3p 12 80
>hsa-miR-5688 MIMAT0022479 Homo sapiens miR-5688
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttgtta 7
|||||||
Sbjct: 7 tttgtta 1
>osa-miR5513 MIMAT0022146 Oryza sativa miR5513
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttgtta 7
|||||||
Sbjct: 7 tttgtta 1
>ath-miR5017-5p MIMAT0032120 Arabidopsis thaliana miR5017-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttgtta 7
|||||||
Sbjct: 2 tttgtta 8
>dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster
miR-4967-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttgtta 7
|||||||
Sbjct: 7 tttgtta 1
>ath-miR4239 MIMAT0017947 Arabidopsis thaliana miR4239
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttgtta 7
|||||||
Sbjct: 1 tttgtta 7
>bmo-miR-3358 MIMAT0015544 Bombyx mori miR-3358
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttgtta 7
|||||||
Sbjct: 2 tttgtta 8
>dps-miR-2575-5p MIMAT0012420 Drosophila pseudoobscura
miR-2575-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttgtta 7
|||||||
Sbjct: 1 tttgtta 7
>ata-miR2275a-3p MIMAT0037111 Aegilops tauschii miR2275a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>tae-miR9773 MIMAT0036983 Triticum aestivum miR9773
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>gra-miR827b MIMAT0036968 Gossypium raimondii miR827b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>oha-miR-7-3-3p MIMAT0036948 Ophiophagus hannah miR-7-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>oha-miR-375-3p MIMAT0036918 Ophiophagus hannah miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>chi-miR-7-3p MIMAT0036289 Capra hircus miR-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 6 tttgtt 1
>chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>chi-miR-544-5p MIMAT0036276 Capra hircus miR-544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>chi-miR-1814 MIMAT0036000 Capra hircus miR-1814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>dvi-miR-375-3p MIMAT0035569 Drosophila virilis miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cfa-miR-8881 MIMAT0034381 Canis familiaris miR-8881
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>gra-miR8762d MIMAT0034214 Gossypium raimondii miR8762d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 1 ttgtta 6
>gra-miR7502c MIMAT0034014 Gossypium raimondii miR7502c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 1 ttgtta 6
>gra-miR7502b MIMAT0034013 Gossypium raimondii miR7502b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 1 ttgtta 6
>ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ppc-miR-8240-3p MIMAT0032937 Pristionchus pacificus miR-8240-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ssa-miR-375-3p MIMAT0032626 Salmo salar miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>bbe-miR-375-3p MIMAT0031676 Branchiostoma belcheri miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>hsa-miR-8068 MIMAT0030995 Homo sapiens miR-8068
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>pmi-miR-375-3p MIMAT0032173 Patiria miniata miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>sci-miR-7642-5p MIMAT0029783 Sycon ciliatum miR-7642-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>cbn-miR-355 MIMAT0029771 Caenorhabditis brenneri miR-355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cbn-miR-356 MIMAT0029679 Caenorhabditis brenneri miR-356
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ipu-miR-375 MIMAT0029508 Ictalurus punctatus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ssc-miR-7142-3p MIMAT0028160 Sus scrofa miR-7142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>sbi-miR6230-3p MIMAT0026437 Sorghum bicolor miR6230-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 6 ttgtta 1
>ccr-miR-459-5p MIMAT0026304 Cyprinus carpio miR-459-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 8 ttgtta 3
>ccr-miR-375 MIMAT0026295 Cyprinus carpio miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>meu-miR-6313 MIMAT0025021 Macropus eugenii miR-6313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ggo-miR-375 MIMAT0024189 Gorilla gorilla miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>osa-miR5827 MIMAT0023301 Oryza sativa miR5827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ath-miR833b MIMAT0022419 Arabidopsis thaliana miR833b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>cel-miR-356b-3p MIMAT0022312 Caenorhabditis elegans miR-356b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>aca-miR-375-3p MIMAT0021951 Anolis carolinensis miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>asu-miR-375-3p MIMAT0021526 Ascaris suum miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>mmu-miR-5101 MIMAT0020608 Mus musculus miR-5101
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>pma-miR-4576 MIMAT0019609 Petromyzon marinus miR-4576
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>pma-miR-375b-3p MIMAT0019545 Petromyzon marinus miR-375b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>pma-miR-375a-3p MIMAT0019543 Petromyzon marinus miR-375a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>oar-miR-544-5p MIMAT0019298 Ovis aries miR-544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>ngi-miR-375 MIMAT0018384 Nasonia giraulti miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>gma-miR4409 MIMAT0018328 Glycine max miR4409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 6 ttgtta 1
>gma-miR4408 MIMAT0018327 Glycine max miR4408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 6 ttgtta 1
>gma-miR4364b MIMAT0018234 Glycine max miR4364b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 6 ttgtta 1
>tca-miR-375-3p MIMAT0018795 Tribolium castaneum miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>cin-miR-4154-3p MIMAT0016758 Ciona intestinalis miR-4154-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cin-miR-4072-5p MIMAT0016632 Ciona intestinalis miR-4072-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>ppy-miR-375 MIMAT0015863 Pongo pygmaeus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>nvi-miR-375 MIMAT0015699 Nasonia vitripennis miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>aly-miR852-5p MIMAT0017639 Arabidopsis lyrata miR852-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>tgu-miR-375 MIMAT0014572 Taeniopygia guttata miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cqu-miR-375 MIMAT0014443 Culex quinquefasciatus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>aae-miR-375 MIMAT0014298 Aedes aegypti miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>zma-miR827-5p MIMAT0015365 Zea mays miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>eca-miR-545 MIMAT0013239 Equus caballus miR-545
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
>bmo-miR-375-3p MIMAT0013649 Bombyx mori miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>isc-miR-375 MIMAT0012700 Ixodes scapularis miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>dpu-miR-375 MIMAT0012664 Daphnia pulex miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgtta 7
||||||
Sbjct: 7 ttgtta 2
>dsi-miR-375-3p MIMAT0012490 Drosophila simulans miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>dps-miR-375-3p MIMAT0012254 Drosophila pseudoobscura miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>bta-miR-2310 MIMAT0011822 Bos taurus miR-2310
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>zma-miR2275d-3p MIMAT0011774 Zea mays miR2275d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>zma-miR2275a-3p MIMAT0011768 Zea mays miR2275a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>crm-miR-356 MIMAT0011611 Caenorhabditis remanei miR-356
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>crm-miR-355 MIMAT0011535 Caenorhabditis remanei miR-355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cfa-miR-375 MIMAT0009871 Canis familiaris miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>sko-miR-375 MIMAT0009683 Saccoglossus kowalevskii miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>lgi-miR-375 MIMAT0009676 Lottia gigantea miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cte-miR-375 MIMAT0009544 Capitella teleta miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ptr-miR-375 MIMAT0008125 Pan troglodytes miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>aga-miR-375 MIMAT0007860 Anopheles gambiae miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>mml-miR-375 MIMAT0006302 Macaca mulatta miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>gga-miR-1808 MIMAT0007726 Gallus gallus miR-1808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cin-miR-126-5p MIMAT0015258 Ciona intestinalis miR-126-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>xtr-miR-375 MIMAT0005565 Xenopus tropicalis miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>rno-miR-375-3p MIMAT0005307 Rattus norvegicus miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>smo-miR1112-5p MIMAT0005269 Selaginella moellendorffii
miR1112-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>dme-miR-375-3p MIMAT0005472 Drosophila melanogaster miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>ame-miR-375 MIMAT0004431 Apis mellifera miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>mmu-miR-544-5p MIMAT0017282 Mus musculus miR-544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgtta 7
||||||
Sbjct: 3 ttgtta 8
>ath-miR833a-5p MIMAT0004252 Arabidopsis thaliana miR833a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>gga-miR-375 MIMAT0003362 Gallus gallus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>tni-miR-375 MIMAT0003070 Tetraodon nigroviridis miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>fru-miR-375 MIMAT0003069 Fugu rubripes miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>dre-miR-375 MIMAT0001876 Danio rerio miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>cbr-miR-355 MIMAT0001319 Caenorhabditis briggsae miR-355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 3 tttgtt 8
>mmu-miR-375-3p MIMAT0000739 Mus musculus miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>hsa-miR-375 MIMAT0000728 Homo sapiens miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>cel-miR-355-5p MIMAT0000697 Caenorhabditis elegans miR-355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttgtt 6
||||||
Sbjct: 1 tttgtt 6
>rno-miR-7a-1-3p MIMAT0000607 Rattus norvegicus miR-7a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tttgtt 6
||||||
Sbjct: 8 tttgtt 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 163
Number of extensions: 156
Number of successful extensions: 110
Number of sequences better than 100.0: 110
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 110
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)