BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= iltv-miR-i7
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

iltv-miR-I7 MIMAT0012861 Infectious laryngotracheitis miR-I7           16   6.9  
gma-miR5780c MIMAT0036352 Glycine max miR5780c                         14      27
gra-miR8709a MIMAT0034015 Gossypium raimondii miR8709a                 14      27
bdi-miR7741-5p.1 MIMAT0030220 Brachypodium distachyon miR7741-5p.1     14      27
>iltv-miR-I7 MIMAT0012861 Infectious laryngotracheitis miR-I7
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttttaata 8
         ||||||||
Sbjct: 1 ttttaata 8
>gma-miR5780c MIMAT0036352 Glycine max miR5780c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttaata 8
         |||||||
Sbjct: 1 tttaata 7
>gra-miR8709a MIMAT0034015 Gossypium raimondii miR8709a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttaata 8
         |||||||
Sbjct: 8 tttaata 2
>bdi-miR7741-5p.1 MIMAT0030220 Brachypodium distachyon
         miR7741-5p.1
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaat 7
         |||||||
Sbjct: 1 ttttaat 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 77
Number of extensions: 72
Number of successful extensions: 57
Number of sequences better than 100.0: 4
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)