BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hvsa-miR-hsur2-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p        16   6.9  
ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p                    14      27
gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p          14      27
stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c                   14      27
stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p             14      27
stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p             14      27
stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a                   14      27
cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623             14      27
aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p           14      27
nlo-miR-927 MIMAT0018438 Nasonia longicornis miR-927                   14      27
ngi-miR-927 MIMAT0018394 Nasonia giraulti miR-927                      14      27
ame-miR-927b MIMAT0018576 Apis mellifera miR-927b                      14      27
ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303                      14      27
nvi-miR-927 MIMAT0015700 Nasonia vitripennis miR-927                   14      27
ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303                     14      27
hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303                        14      27
ame-miR-927a MIMAT0004438 Apis mellifera miR-927a                      14      27
hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p                  14      27
>hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttttagag 8
         ||||||||
Sbjct: 1 ttttagag 8
>ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 2 tttagag 8
>gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 8 tttagag 2
>stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 8 tttagag 2
>stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 8 tttagag 2
>aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 2 ttttaga 8
>nlo-miR-927 MIMAT0018438 Nasonia longicornis miR-927
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 1 ttttaga 7
>ngi-miR-927 MIMAT0018394 Nasonia giraulti miR-927
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 1 ttttaga 7
>ame-miR-927b MIMAT0018576 Apis mellifera miR-927b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 1 ttttaga 7
>ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>nvi-miR-927 MIMAT0015700 Nasonia vitripennis miR-927
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 1 ttttaga 7
>ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 1 tttagag 7
>ame-miR-927a MIMAT0004438 Apis mellifera miR-927a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttaga 7
         |||||||
Sbjct: 1 ttttaga 7
>hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttagag 8
         |||||||
Sbjct: 8 tttagag 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 100
Number of successful extensions: 88
Number of sequences better than 100.0: 18
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)