BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p 16 6.9
ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p 14 27
gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p 14 27
stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c 14 27
stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p 14 27
stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p 14 27
stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a 14 27
cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623 14 27
aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p 14 27
nlo-miR-927 MIMAT0018438 Nasonia longicornis miR-927 14 27
ngi-miR-927 MIMAT0018394 Nasonia giraulti miR-927 14 27
ame-miR-927b MIMAT0018576 Apis mellifera miR-927b 14 27
ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303 14 27
nvi-miR-927 MIMAT0015700 Nasonia vitripennis miR-927 14 27
ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303 14 27
hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303 14 27
ame-miR-927a MIMAT0004438 Apis mellifera miR-927a 14 27
hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p 14 27
>hvsa-miR-HSUR2-3p MIMAT0022687 Herpesvirus saimiri miR-HSUR2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttttagag 8
||||||||
Sbjct: 1 ttttagag 8
>ssc-miR-9832-3p MIMAT0037050 Sus scrofa miR-9832-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 2 tttagag 8
>gsa-miR-9393-3p MIMAT0035331 Gyrodactylus salaris miR-9393-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttagag 8
|||||||
Sbjct: 8 tttagag 2
>stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttagag 8
|||||||
Sbjct: 8 tttagag 2
>stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>cbn-miR-7623 MIMAT0029665 Caenorhabditis brenneri miR-7623
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttagag 8
|||||||
Sbjct: 8 tttagag 2
>aca-miR-5406-5p MIMAT0022020 Anolis carolinensis miR-5406-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 2 ttttaga 8
>nlo-miR-927 MIMAT0018438 Nasonia longicornis miR-927
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 1 ttttaga 7
>ngi-miR-927 MIMAT0018394 Nasonia giraulti miR-927
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 1 ttttaga 7
>ame-miR-927b MIMAT0018576 Apis mellifera miR-927b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 1 ttttaga 7
>ppy-miR-1303 MIMAT0016223 Pongo pygmaeus miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>nvi-miR-927 MIMAT0015700 Nasonia vitripennis miR-927
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 1 ttttaga 7
>ptr-miR-1303 MIMAT0008022 Pan troglodytes miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>hsa-miR-1303 MIMAT0005891 Homo sapiens miR-1303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttagag 8
|||||||
Sbjct: 1 tttagag 7
>ame-miR-927a MIMAT0004438 Apis mellifera miR-927a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttaga 7
|||||||
Sbjct: 1 ttttaga 7
>hsa-miR-520f-5p MIMAT0026609 Homo sapiens miR-520f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttagag 8
|||||||
Sbjct: 8 tttagag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 100
Number of successful extensions: 88
Number of sequences better than 100.0: 18
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)