BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d 14 20
bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p 14 20
tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p 14 20
gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p 14 20
mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p 14 20
mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p 14 20
ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444 14 20
mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344 14 20
ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221 14 20
aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p 14 20
hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p 14 20
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 14 20
oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus miR-1422m-3p 14 20
ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p 14 20
ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p 14 20
tch-miR-9771k MIMAT0036578 Tupaia chinensis miR-9771k 12 80
tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a 12 80
dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p 12 80
sly-miR482d-3p MIMAT0035460 Solanum lycopersicum miR482d-3p 12 80
cfa-miR-8836 MIMAT0034329 Canis familiaris miR-8836 12 80
gra-miR482d MIMAT0034224 Gossypium raimondii miR482d 12 80
str-miR-8365-3p MIMAT0033303 Strongyloides ratti miR-8365-3p 12 80
ppe-miR482f MIMAT0031512 Prunus persica miR482f 12 80
stu-miR319-5p MIMAT0031219 Solanum tuberosum miR319-5p 12 80
stu-miR8039 MIMAT0030951 Solanum tuberosum miR8039 12 80
prd-miR-7902-3p MIMAT0030615 Panagrellus redivivus miR-7902-3p 12 80
bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon miR7708a-5p 12 80
mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p 12 80
lja-miR7537 MIMAT0029363 Lotus japonicus miR7537 12 80
mdo-miR-7256-5p MIMAT0028478 Monodelphis domestica miR-7256-5p 12 80
mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p 12 80
mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p 12 80
hsa-miR-7152-5p MIMAT0028214 Homo sapiens miR-7152-5p 12 80
bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b 12 80
mdm-miR482c MIMAT0026023 Malus domestica miR482c 12 80
mdm-miR482b MIMAT0026022 Malus domestica miR482b 12 80
mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p 12 80
gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p 12 80
gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p 12 80
pde-miR482a MIMAT0025333 Pinus densata miR482a 12 80
mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384 12 80
osa-miR6255 MIMAT0024878 Oryza sativa miR6255 12 80
hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190 12 80
pgi-miR2118 MIMAT0027240 Panax ginseng miR2118 12 80
stu-miR482c MIMAT0023596 Solanum tuberosum miR482c 12 80
osa-miR812u MIMAT0023273 Oryza sativa miR812u 12 80
osa-miR812t MIMAT0023272 Oryza sativa miR812t 12 80
mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p 12 80
mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p 12 80
mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p 12 80
mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p 12 80
aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p 12 80
aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403 12 80
aca-miR-202-5p MIMAT0021848 Anolis carolinensis miR-202-5p 12 80
sly-miR482e-3p MIMAT0032124 Solanum lycopersicum miR482e-3p 12 80
mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b 12 80
mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a 12 80
bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198 12 80
hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093 12 80
hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p 12 80
osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p 12 80
pma-miR-26a-2-3p MIMAT0019410 Petromyzon marinus miR-26a-2-3p 12 80
csi-miR472 MIMAT0018473 Citrus sinensis miR472 12 80
ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740 12 80
ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729 12 80
pab-miR482c MIMAT0018158 Picea abies miR482c 12 80
hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685 12 80
hsa-miR-4261 MIMAT0016890 Homo sapiens miR-4261 12 80
cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p 12 80
cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p 12 80
cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p 12 80
aly-miR3448-5p MIMAT0017731 Arabidopsis lyrata miR3448-5p 12 80
hsa-miR-3124-3p MIMAT0019200 Homo sapiens miR-3124-3p 12 80
tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975 12 80
tgu-miR-2956 MIMAT0014454 Taeniopygia guttata miR-2956 12 80
ghr-miR482a MIMAT0014339 Gossypium hirsutum miR482a 12 80
zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p 12 80
eca-miR-684 MIMAT0012930 Equus caballus miR-684 12 80
mml-miR-670-3p MIMAT0026954 Macaca mulatta miR-670-3p 12 80
cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715 12 80
mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g 12 80
mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f 12 80
mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c 12 80
mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b 12 80
mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e 12 80
mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d 12 80
mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a 12 80
dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p 12 80
bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p 12 80
osa-miR2055 MIMAT0009980 Oryza sativa miR2055 12 80
mmu-miR-1958 MIMAT0009431 Mus musculus miR-1958 12 80
dvi-miR-316-3p MIMAT0032071 Drosophila virilis miR-316-3p 12 80
osa-miR1859 MIMAT0007792 Oryza sativa miR1859 12 80
cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841 12 80
vvi-miR482 MIMAT0006576 Vitis vinifera miR482 12 80
mml-miR-516a-3p MIMAT0006374 Macaca mulatta miR-516a-3p 12 80
gga-miR-1687-5p MIMAT0007576 Gallus gallus miR-1687-5p 12 80
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612 12 80
gga-miR-1571 MIMAT0007431 Gallus gallus miR-1571 12 80
oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus miR-1422o-3p 12 80
oan-miR-1374 MIMAT0007055 Ornithorhynchus anatinus miR-1374 12 80
oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus miR-1422g-3p 12 80
oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus miR-1422e-3p 12 80
xtr-miR-202-5p MIMAT0003620 Xenopus tropicalis miR-202-5p 12 80
ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d 12 80
mmu-miR-684 MIMAT0003462 Mus musculus miR-684 12 80
mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p 12 80
mmu-miR-670-3p MIMAT0017242 Mus musculus miR-670-3p 12 80
hsa-miR-670-3p MIMAT0026640 Homo sapiens miR-670-3p 12 80
gga-miR-202-5p MIMAT0003354 Gallus gallus miR-202-5p 12 80
hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p 12 80
ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b 12 80
ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a 12 80
rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p 12 80
dme-miR-316-3p MIMAT0020842 Drosophila melanogaster miR-316-3p 12 80
>gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttcct 7
|||||||
Sbjct: 7 ttttcct 1
>bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 1 ttttcct 7
>gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 1 ttttcct 7
>mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttcct 7
|||||||
Sbjct: 8 ttttcct 2
>ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttcct 7
|||||||
Sbjct: 8 ttttcct 2
>mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 1 ttttcct 7
>aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 1 ttttcct 7
>oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus
miR-1422m-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttcct 7
|||||||
Sbjct: 7 ttttcct 1
>ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttcct 7
|||||||
Sbjct: 2 ttttcct 8
>tch-miR-9771k MIMAT0036578 Tupaia chinensis miR-9771k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 6 tttcct 1
>tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>sly-miR482d-3p MIMAT0035460 Solanum lycopersicum miR482d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>cfa-miR-8836 MIMAT0034329 Canis familiaris miR-8836
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 6 tttcct 1
>gra-miR482d MIMAT0034224 Gossypium raimondii miR482d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>str-miR-8365-3p MIMAT0033303 Strongyloides ratti miR-8365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>ppe-miR482f MIMAT0031512 Prunus persica miR482f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>stu-miR319-5p MIMAT0031219 Solanum tuberosum miR319-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 6 tttcct 1
>stu-miR8039 MIMAT0030951 Solanum tuberosum miR8039
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>prd-miR-7902-3p MIMAT0030615 Panagrellus redivivus miR-7902-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon
miR7708a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>lja-miR7537 MIMAT0029363 Lotus japonicus miR7537
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 7 tttcct 2
>mdo-miR-7256-5p MIMAT0028478 Monodelphis domestica miR-7256-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>hsa-miR-7152-5p MIMAT0028214 Homo sapiens miR-7152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>mdm-miR482c MIMAT0026023 Malus domestica miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mdm-miR482b MIMAT0026022 Malus domestica miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>pde-miR482a MIMAT0025333 Pinus densata miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>osa-miR6255 MIMAT0024878 Oryza sativa miR6255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>pgi-miR2118 MIMAT0027240 Panax ginseng miR2118
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>stu-miR482c MIMAT0023596 Solanum tuberosum miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>osa-miR812u MIMAT0023273 Oryza sativa miR812u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>osa-miR812t MIMAT0023272 Oryza sativa miR812t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>aca-miR-202-5p MIMAT0021848 Anolis carolinensis miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>sly-miR482e-3p MIMAT0032124 Solanum lycopersicum miR482e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 6 tttcct 1
>hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>pma-miR-26a-2-3p MIMAT0019410 Petromyzon marinus miR-26a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>csi-miR472 MIMAT0018473 Citrus sinensis miR472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>pab-miR482c MIMAT0018158 Picea abies miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>hsa-miR-4261 MIMAT0016890 Homo sapiens miR-4261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 6 tttcct 1
>cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>aly-miR3448-5p MIMAT0017731 Arabidopsis lyrata miR3448-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>hsa-miR-3124-3p MIMAT0019200 Homo sapiens miR-3124-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>tgu-miR-2956 MIMAT0014454 Taeniopygia guttata miR-2956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 7 tttcct 2
>ghr-miR482a MIMAT0014339 Gossypium hirsutum miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 2 tttcct 7
>eca-miR-684 MIMAT0012930 Equus caballus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mml-miR-670-3p MIMAT0026954 Macaca mulatta miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>osa-miR2055 MIMAT0009980 Oryza sativa miR2055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>mmu-miR-1958 MIMAT0009431 Mus musculus miR-1958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 7 tttcct 2
>dvi-miR-316-3p MIMAT0032071 Drosophila virilis miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>osa-miR1859 MIMAT0007792 Oryza sativa miR1859
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>vvi-miR482 MIMAT0006576 Vitis vinifera miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>mml-miR-516a-3p MIMAT0006374 Macaca mulatta miR-516a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>gga-miR-1687-5p MIMAT0007576 Gallus gallus miR-1687-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>gga-miR-1571 MIMAT0007431 Gallus gallus miR-1571
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus
miR-1422o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>oan-miR-1374 MIMAT0007055 Ornithorhynchus anatinus miR-1374
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 3 tttcct 8
>oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus
miR-1422g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus
miR-1422e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>xtr-miR-202-5p MIMAT0003620 Xenopus tropicalis miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>mmu-miR-684 MIMAT0003462 Mus musculus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>mmu-miR-670-3p MIMAT0017242 Mus musculus miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>hsa-miR-670-3p MIMAT0026640 Homo sapiens miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>gga-miR-202-5p MIMAT0003354 Gallus gallus miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
>ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttcct 7
||||||
Sbjct: 1 tttcct 6
>dme-miR-316-3p MIMAT0020842 Drosophila melanogaster miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttcct 7
||||||
Sbjct: 8 tttcct 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 153
Number of extensions: 138
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
