BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m11-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p                 16   6.9  
dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p              14      27
gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d                 14      27
bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p         14      27
mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p                  14      27
tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p           14      27
gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p                 14      27
mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p         14      27
mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p                14      27
ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444                   14      27
mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344                        14      27
ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221                  14      27
cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p          14      27
aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p                14      27
tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975                 14      27
zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p                        14      27
hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p                    14      27
dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p        14      27
osa-miR2055 MIMAT0009980 Oryza sativa miR2055                          14      27
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612                       14      27
oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus miR-1422m-3p    14      27
ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p              14      27
ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p              14      27
hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p                    14      27
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttttcctt 8
         ||||||||
Sbjct: 1 ttttcctt 8
>dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 8 tttcctt 2
>gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 7 ttttcct 1
>bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 1 tttcctt 7
>tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 1 ttttcct 7
>gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 1 ttttcct 7
>mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 8 ttttcct 2
>ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 8 ttttcct 2
>mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 1 ttttcct 7
>cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 1 tttcctt 7
>aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 8 tttcctt 2
>zma-miR395k-5p MIMAT0015343 Zea mays miR395k-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 2 tttcctt 8
>hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 8 tttcctt 2
>osa-miR2055 MIMAT0009980 Oryza sativa miR2055
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 1 tttcctt 7
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 8 tttcctt 2
>oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus
         miR-1422m-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 7 ttttcct 1
>ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttcct 7
         |||||||
Sbjct: 2 ttttcct 8
>hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttcctt 8
         |||||||
Sbjct: 8 tttcctt 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 225
Number of extensions: 200
Number of successful extensions: 151
Number of sequences better than 100.0: 24
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)