BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m18-5p_-1_5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586 14 20
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p 14 20
gma-miR5369 MIMAT0021603 Glycine max miR5369 14 20
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p 14 20
gma-miR4393a MIMAT0018308 Glycine max miR4393a 14 20
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p 14 20
hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13 14 20
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p 14 20
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p 14 20
tch-miR-9771o MIMAT0036614 Tupaia chinensis miR-9771o 12 80
tch-miR-9771j MIMAT0036557 Tupaia chinensis miR-9771j 12 80
nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467 12 80
nve-miR-9446 MIMAT0035407 Nematostella vectensis miR-9446 12 80
xtr-miR-428b MIMAT0035362 Xenopus tropicalis miR-428b 12 80
eca-miR-9084 MIMAT0034629 Equus caballus miR-9084 12 80
gra-miR8787 MIMAT0034241 Gossypium raimondii miR8787 12 80
gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m 12 80
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l 12 80
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k 12 80
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f 12 80
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e 12 80
gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672 12 80
gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c 12 80
atr-miR8608 MIMAT0033899 Amborella trichopoda miR8608 12 80
sma-miR-8423-5p MIMAT0033550 Schistosoma mansoni miR-8423-5p 12 80
sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p 12 80
ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824 12 80
hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737 12 80
bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p 12 80
bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p 12 80
ghr-miR7508 MIMAT0029155 Gossypium hirsutum miR7508 12 80
mdo-miR-1544d-3p MIMAT0028755 Monodelphis domestica miR-1544d-3p 12 80
mdo-miR-1544e-3p MIMAT0031034 Monodelphis domestica miR-1544e-3p 12 80
mdo-miR-1544c-3p MIMAT0028747 Monodelphis domestica miR-1544c-3p 12 80
mdo-miR-1544b-3p MIMAT0028745 Monodelphis domestica miR-1544b-3p 12 80
mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p 12 80
sbi-miR6229-3p MIMAT0026435 Sorghum bicolor miR6229-3p 12 80
mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p 12 80
hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p 12 80
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p 12 80
nta-miR6162 MIMAT0024777 Nicotiana tabacum miR6162 12 80
mse-miR-6099 MIMAT0024507 Manduca sexta miR-6099 12 80
hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680 12 80
cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p 12 80
asu-miR-5350d-5p MIMAT0021558 Ascaris suum miR-5350d-5p 12 80
asu-miR-5350a-5p MIMAT0021552 Ascaris suum miR-5350a-5p 12 80
dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster miR-4915-5p 12 80
bfl-miR-4882c MIMAT0020468 Branchiostoma floridae miR-4882c 12 80
bfl-miR-4882a MIMAT0020466 Branchiostoma floridae miR-4882a 12 80
pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p 12 80
tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p 12 80
ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765 12 80
ath-miR3440b-5p MIMAT0017945 Arabidopsis thaliana miR3440b-5p 12 80
cin-miR-4211-5p MIMAT0016832 Ciona intestinalis miR-4211-5p 12 80
aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p 12 80
hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p 12 80
bmo-miR-2787-3p MIMAT0013684 Bombyx mori miR-2787-3p 12 80
osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p 12 80
cel-miR-1822-5p MIMAT0015266 Caenorhabditis elegans miR-1822-5p 12 80
mdo-miR-1544a-3p MIMAT0026768 Monodelphis domestica miR-1544a-3p 12 80
oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus miR-1422k-3p 12 80
oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus miR-1422c-3p 12 80
oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus miR-1422b-3p 12 80
ppt-miR1026b MIMAT0005113 Physcomitrella patens miR1026b 12 80
ppt-miR1026a MIMAT0005112 Physcomitrella patens miR1026a 12 80
mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p 12 80
ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838 12 80
hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p 12 80
ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p 12 80
cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p 12 80
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>gma-miR5369 MIMAT0021603 Glycine max miR5369
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttctc 7
|||||||
Sbjct: 8 ttttctc 2
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
miR-4945-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>gma-miR4393a MIMAT0018308 Glycine max miR4393a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttctc 7
|||||||
Sbjct: 8 ttttctc 2
>cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 2 ttttctc 8
>hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>tch-miR-9771o MIMAT0036614 Tupaia chinensis miR-9771o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>tch-miR-9771j MIMAT0036557 Tupaia chinensis miR-9771j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>nve-miR-9446 MIMAT0035407 Nematostella vectensis miR-9446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>xtr-miR-428b MIMAT0035362 Xenopus tropicalis miR-428b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 6 tttctc 1
>eca-miR-9084 MIMAT0034629 Equus caballus miR-9084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>gra-miR8787 MIMAT0034241 Gossypium raimondii miR8787
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>gra-miR8672 MIMAT0034044 Gossypium raimondii miR8672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>gra-miR7504c MIMAT0034027 Gossypium raimondii miR7504c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>atr-miR8608 MIMAT0033899 Amborella trichopoda miR8608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>sma-miR-8423-5p MIMAT0033550 Schistosoma mansoni miR-8423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>ptc-miR7824 MIMAT0030383 Populus trichocarpa miR7824
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 8 ttttct 3
>bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>ghr-miR7508 MIMAT0029155 Gossypium hirsutum miR7508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 8 ttttct 3
>mdo-miR-1544d-3p MIMAT0028755 Monodelphis domestica
miR-1544d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544e-3p MIMAT0031034 Monodelphis domestica
miR-1544e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544c-3p MIMAT0028747 Monodelphis domestica
miR-1544c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544b-3p MIMAT0028745 Monodelphis domestica
miR-1544b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>sbi-miR6229-3p MIMAT0026435 Sorghum bicolor miR6229-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>mmu-miR-6896-3p MIMAT0027693 Mus musculus miR-6896-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>hsa-miR-6833-3p MIMAT0027567 Homo sapiens miR-6833-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>nta-miR6162 MIMAT0024777 Nicotiana tabacum miR6162
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>mse-miR-6099 MIMAT0024507 Manduca sexta miR-6099
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 7 tttctc 2
>hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 6 tttctc 1
>cin-miR-5604-3p MIMAT0022334 Ciona intestinalis miR-5604-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>asu-miR-5350d-5p MIMAT0021558 Ascaris suum miR-5350d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 3 tttctc 8
>asu-miR-5350a-5p MIMAT0021552 Ascaris suum miR-5350a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 3 tttctc 8
>dme-miR-4915-5p MIMAT0020508 Drosophila melanogaster
miR-4915-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>bfl-miR-4882c MIMAT0020468 Branchiostoma floridae miR-4882c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
>bfl-miR-4882a MIMAT0020466 Branchiostoma floridae miR-4882a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 7 tttctc 2
>pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 8 ttttct 3
>ath-miR3440b-5p MIMAT0017945 Arabidopsis thaliana miR3440b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>cin-miR-4211-5p MIMAT0016832 Ciona intestinalis miR-4211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 8 ttttct 3
>aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 1 tttctc 6
>bmo-miR-2787-3p MIMAT0013684 Bombyx mori miR-2787-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 7 tttctc 2
>osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>cel-miR-1822-5p MIMAT0015266 Caenorhabditis elegans miR-1822-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttctc 7
||||||
Sbjct: 3 tttctc 8
>mdo-miR-1544a-3p MIMAT0026768 Monodelphis domestica
miR-1544a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus
miR-1422k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus
miR-1422c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus
miR-1422b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttct 6
||||||
Sbjct: 6 ttttct 1
>ppt-miR1026b MIMAT0005113 Physcomitrella patens miR1026b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 7 tttctc 2
>ppt-miR1026a MIMAT0005112 Physcomitrella patens miR1026a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 7 tttctc 2
>mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 1 ttttct 6
>hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttct 6
||||||
Sbjct: 3 ttttct 8
>cel-miR-247-5p MIMAT0015119 Caenorhabditis elegans miR-247-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttctc 7
||||||
Sbjct: 8 tttctc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 98
Number of extensions: 89
Number of successful extensions: 70
Number of sequences better than 100.0: 70
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 70
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
