BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13 16 6.9
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p 16 6.9
gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m 14 27
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l 14 27
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k 14 27
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f 14 27
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e 14 27
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586 14 27
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p 14 27
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p 14 27
gma-miR5369 MIMAT0021603 Glycine max miR5369 14 27
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p 14 27
bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b 14 27
gma-miR4393a MIMAT0018308 Glycine max miR4393a 14 27
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p 14 27
ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539 14 27
eca-miR-539 MIMAT0013167 Equus caballus miR-539 14 27
cfa-miR-539 MIMAT0009909 Canis familiaris miR-539 14 27
bta-miR-539 MIMAT0009342 Bos taurus miR-539 14 27
ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539 14 27
mml-miR-539 MIMAT0006405 Macaca mulatta miR-539 14 27
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p 14 27
rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p 14 27
mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p 14 27
hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p 14 27
>hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttttctcc 8
||||||||
Sbjct: 1 ttttctcc 8
>mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttttctcc 8
||||||||
Sbjct: 1 ttttctcc 8
>gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctcc 8
|||||||
Sbjct: 1 tttctcc 7
>gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctcc 8
|||||||
Sbjct: 1 tttctcc 7
>gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctcc 8
|||||||
Sbjct: 1 tttctcc 7
>gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 8 tttctcc 2
>gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 8 tttctcc 2
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 8 tttctcc 2
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>gma-miR5369 MIMAT0021603 Glycine max miR5369
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttctc 7
|||||||
Sbjct: 8 ttttctc 2
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
miR-4945-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>gma-miR4393a MIMAT0018308 Glycine max miR4393a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttctc 7
|||||||
Sbjct: 8 ttttctc 2
>cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 2 ttttctc 8
>ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>eca-miR-539 MIMAT0013167 Equus caballus miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>cfa-miR-539 MIMAT0009909 Canis familiaris miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>bta-miR-539 MIMAT0009342 Bos taurus miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>mml-miR-539 MIMAT0006405 Macaca mulatta miR-539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttctc 7
|||||||
Sbjct: 1 ttttctc 7
>rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
>hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctcc 8
|||||||
Sbjct: 7 tttctcc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 284
Number of extensions: 257
Number of successful extensions: 229
Number of sequences better than 100.0: 25
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)