BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m9-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13                        16   6.9  
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p                   16   6.9  
gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m                 14      27
gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l                 14      27
gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k                 14      27
gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f                 14      27
gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e                 14      27
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586                  14      27
gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p                 14      27
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p           14      27
gma-miR5369 MIMAT0021603 Glycine max miR5369                           14      27
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p       14      27
bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b            14      27
gma-miR4393a MIMAT0018308 Glycine max miR4393a                         14      27
cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p            14      27
ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539                        14      27
eca-miR-539 MIMAT0013167 Equus caballus miR-539                        14      27
cfa-miR-539 MIMAT0009909 Canis familiaris miR-539                      14      27
bta-miR-539 MIMAT0009342 Bos taurus miR-539                            14      27
ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539                       14      27
mml-miR-539 MIMAT0006405 Macaca mulatta miR-539                        14      27
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p                 14      27
rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p               14      27
mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p                    14      27
hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p                    14      27
>hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttttctcc 8
         ||||||||
Sbjct: 1 ttttctcc 8
>mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ttttctcc 8
         ||||||||
Sbjct: 1 ttttctcc 8
>gra-miR7504m MIMAT0034227 Gossypium raimondii miR7504m
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 1 tttctcc 7
>gra-miR7504l MIMAT0034226 Gossypium raimondii miR7504l
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 1 tttctcc 7
>gra-miR7504k MIMAT0034225 Gossypium raimondii miR7504k
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 1 tttctcc 7
>gra-miR7504f MIMAT0034068 Gossypium raimondii miR7504f
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 8 tttctcc 2
>gra-miR7504e MIMAT0034067 Gossypium raimondii miR7504e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 8 tttctcc 2
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 1 ttttctc 7
>gga-miR-6706-5p MIMAT0025816 Gallus gallus miR-6706-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 8 tttctcc 2
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 1 ttttctc 7
>gma-miR5369 MIMAT0021603 Glycine max miR5369
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 8 ttttctc 2
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
         miR-4945-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 1 ttttctc 7
>bfl-miR-4882b MIMAT0020467 Branchiostoma floridae miR-4882b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>gma-miR4393a MIMAT0018308 Glycine max miR4393a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 8 ttttctc 2
>cin-miR-4034-3p MIMAT0016558 Ciona intestinalis miR-4034-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 2 ttttctc 8
>ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>eca-miR-539 MIMAT0013167 Equus caballus miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>cfa-miR-539 MIMAT0009909 Canis familiaris miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>bta-miR-539 MIMAT0009342 Bos taurus miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>mml-miR-539 MIMAT0006405 Macaca mulatta miR-539
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttttctc 7
         |||||||
Sbjct: 1 ttttctc 7
>rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
>hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctcc 8
         |||||||
Sbjct: 7 tttctcc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 284
Number of extensions: 257
Number of successful extensions: 229
Number of sequences better than 100.0: 25
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)