BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart19-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-29-3p MIMAT0016953 Rhesus lymphocryptovirus miR-rL1... 16 6.9
ebv-miR-BART19-3p MIMAT0003718 Epstein Barr miR-BART19-3p 16 6.9
ata-miR2275a-3p MIMAT0037111 Aegilops tauschii miR2275a-3p 14 27
tae-miR9773 MIMAT0036983 Triticum aestivum miR9773 14 27
gra-miR827b MIMAT0036968 Gossypium raimondii miR827b 14 27
chi-miR-495-3p MIMAT0036256 Capra hircus miR-495-3p 14 27
chi-miR-1814 MIMAT0036000 Capra hircus miR-1814 14 27
sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p 14 27
bol-miR9409 MIMAT0035364 Brassica oleracea miR9409 14 27
efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375 14 27
efu-miR-495 MIMAT0035031 Eptesicus fuscus miR-495 14 27
cfa-miR-8881 MIMAT0034381 Canis familiaris miR-8881 14 27
prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p 14 27
bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b 14 27
cbn-miR-355 MIMAT0029771 Caenorhabditis brenneri miR-355 14 27
ggo-miR-495 MIMAT0024104 Gorilla gorilla miR-495 14 27
tca-miR-6010-5p MIMAT0023561 Tribolium castaneum miR-6010-5p 14 27
mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234 14 27
bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p 14 27
mmu-miR-5101 MIMAT0020608 Mus musculus miR-5101 14 27
pma-miR-4576 MIMAT0019609 Petromyzon marinus miR-4576 14 27
oar-miR-495-3p MIMAT0019274 Ovis aries miR-495-3p 14 27
cin-miR-4072-5p MIMAT0016632 Ciona intestinalis miR-4072-5p 14 27
ppy-miR-495 MIMAT0015916 Pongo pygmaeus miR-495 14 27
eca-miR-495 MIMAT0013165 Equus caballus miR-495 14 27
bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c 14 27
bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a 14 27
bta-miR-2310 MIMAT0011822 Bos taurus miR-2310 14 27
zma-miR2275d-3p MIMAT0011774 Zea mays miR2275d-3p 14 27
zma-miR2275a-3p MIMAT0011768 Zea mays miR2275a-3p 14 27
crm-miR-355 MIMAT0011535 Caenorhabditis remanei miR-355 14 27
bta-miR-495 MIMAT0009335 Bos taurus miR-495 14 27
bta-miR-375 MIMAT0009303 Bos taurus miR-375 14 27
ptr-miR-495 MIMAT0008169 Pan troglodytes miR-495 14 27
cfa-miR-495 MIMAT0006721 Canis familiaris miR-495 14 27
mml-miR-495-3p MIMAT0006357 Macaca mulatta miR-495-3p 14 27
mmu-miR-1192 MIMAT0005850 Mus musculus miR-1192 14 27
rno-miR-495 MIMAT0005320 Rattus norvegicus miR-495 14 27
mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375 14 27
mmu-miR-495-3p MIMAT0003456 Mus musculus miR-495-3p 14 27
hsa-miR-495-3p MIMAT0002817 Homo sapiens miR-495-3p 14 27
cbr-miR-355 MIMAT0001319 Caenorhabditis briggsae miR-355 14 27
cel-miR-355-5p MIMAT0000697 Caenorhabditis elegans miR-355-5p 14 27
>rlcv-miR-rL1-29-3p MIMAT0016953 Rhesus lymphocryptovirus
miR-rL1-29-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttttgttt 8
||||||||
Sbjct: 1 ttttgttt 8
>ebv-miR-BART19-3p MIMAT0003718 Epstein Barr miR-BART19-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttttgttt 8
||||||||
Sbjct: 1 ttttgttt 8
>ata-miR2275a-3p MIMAT0037111 Aegilops tauschii miR2275a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>tae-miR9773 MIMAT0036983 Triticum aestivum miR9773
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>gra-miR827b MIMAT0036968 Gossypium raimondii miR827b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>chi-miR-495-3p MIMAT0036256 Capra hircus miR-495-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>chi-miR-1814 MIMAT0036000 Capra hircus miR-1814
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 2 ttttgtt 8
>sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>bol-miR9409 MIMAT0035364 Brassica oleracea miR9409
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>efu-miR-495 MIMAT0035031 Eptesicus fuscus miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>cfa-miR-8881 MIMAT0034381 Canis familiaris miR-8881
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttgtt 7
|||||||
Sbjct: 8 ttttgtt 2
>cbn-miR-355 MIMAT0029771 Caenorhabditis brenneri miR-355
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>ggo-miR-495 MIMAT0024104 Gorilla gorilla miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>tca-miR-6010-5p MIMAT0023561 Tribolium castaneum miR-6010-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 2 tttgttt 8
>mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>mmu-miR-5101 MIMAT0020608 Mus musculus miR-5101
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>pma-miR-4576 MIMAT0019609 Petromyzon marinus miR-4576
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>oar-miR-495-3p MIMAT0019274 Ovis aries miR-495-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>cin-miR-4072-5p MIMAT0016632 Ciona intestinalis miR-4072-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>ppy-miR-495 MIMAT0015916 Pongo pygmaeus miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>eca-miR-495 MIMAT0013165 Equus caballus miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 2 ttttgtt 8
>bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 2 ttttgtt 8
>bta-miR-2310 MIMAT0011822 Bos taurus miR-2310
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 2 ttttgtt 8
>zma-miR2275d-3p MIMAT0011774 Zea mays miR2275d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>zma-miR2275a-3p MIMAT0011768 Zea mays miR2275a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>crm-miR-355 MIMAT0011535 Caenorhabditis remanei miR-355
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>bta-miR-495 MIMAT0009335 Bos taurus miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>bta-miR-375 MIMAT0009303 Bos taurus miR-375
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>ptr-miR-495 MIMAT0008169 Pan troglodytes miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>cfa-miR-495 MIMAT0006721 Canis familiaris miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>mml-miR-495-3p MIMAT0006357 Macaca mulatta miR-495-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>mmu-miR-1192 MIMAT0005850 Mus musculus miR-1192
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>rno-miR-495 MIMAT0005320 Rattus norvegicus miR-495
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttgtt 7
|||||||
Sbjct: 1 ttttgtt 7
>mmu-miR-495-3p MIMAT0003456 Mus musculus miR-495-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>hsa-miR-495-3p MIMAT0002817 Homo sapiens miR-495-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttgttt 8
|||||||
Sbjct: 7 tttgttt 1
>cbr-miR-355 MIMAT0001319 Caenorhabditis briggsae miR-355
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
>cel-miR-355-5p MIMAT0000697 Caenorhabditis elegans miR-355-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttgttt 8
|||||||
Sbjct: 1 tttgttt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 268
Number of extensions: 223
Number of successful extensions: 196
Number of sequences better than 100.0: 43
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 43
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
