BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h7-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d 16 6.9
bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p 16 6.9
mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p 16 6.9
aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p 16 6.9
hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p 16 6.9
ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p 16 6.9
ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p 16 6.9
bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon miR7708a-5p 14 27
tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p 14 27
gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p 14 27
mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p 14 27
ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444 14 27
mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344 14 27
ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221 14 27
hsa-miR-3148 MIMAT0015021 Homo sapiens miR-3148 14 27
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 14 27
oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus miR-1422m-3p 14 27
oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus miR-1422g-3p 14 27
smo-miR1103-3p MIMAT0005276 Selaginella moellendorffii miR1103-3p 14 27
mdv2-miR-M24-5p MIMAT0012543 Mareks disease miR-M24-5p 14 27
>gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tttttcct 8
||||||||
Sbjct: 8 tttttcct 1
>bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttttcct 8
||||||||
Sbjct: 1 tttttcct 8
>bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon
miR7708a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttttcc 7
|||||||
Sbjct: 2 tttttcc 8
>tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttttcct 8
|||||||
Sbjct: 1 ttttcct 7
>gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttttcct 8
|||||||
Sbjct: 1 ttttcct 7
>mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttttcct 8
|||||||
Sbjct: 8 ttttcct 2
>ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttttcct 8
|||||||
Sbjct: 8 ttttcct 2
>mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttttcct 8
|||||||
Sbjct: 2 ttttcct 8
>ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttttcct 8
|||||||
Sbjct: 1 ttttcct 7
>hsa-miR-3148 MIMAT0015021 Homo sapiens miR-3148
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttttcc 7
|||||||
Sbjct: 8 tttttcc 2
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttttcct 8
|||||||
Sbjct: 1 ttttcct 7
>oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus
miR-1422m-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttttcct 8
|||||||
Sbjct: 7 ttttcct 1
>oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus
miR-1422g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttttcc 7
|||||||
Sbjct: 7 tttttcc 1
>smo-miR1103-3p MIMAT0005276 Selaginella moellendorffii
miR1103-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttttcc 7
|||||||
Sbjct: 8 tttttcc 2
>mdv2-miR-M24-5p MIMAT0012543 Mareks disease miR-M24-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttttcc 7
|||||||
Sbjct: 1 tttttcc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 199
Number of extensions: 172
Number of successful extensions: 143
Number of sequences better than 100.0: 20
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
