| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggccgg | 7 | ||
| VMR_0953 | rhcmv-miR-rh96-2 | 2 | ....... | 8 | 100 |
| VMR_0034 | bhv5-miR-B12 | 2 | ....... | 8 | 100 |
| VMR_1164 | sfv4-miRT124 | 3 | ......_ | 8 | 85 |
| VMR_0329 | hsv2-miR-h23 | 1 | ......_ | 6 | 85 |
| VMR_0179 | hbv-miR-b2-3p | 2 | _...... | 7 | 85 |
