| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagaagtc | 8 | ||
| VMR_0445 | mcmv-miR-m88-1 | 1 | ........ | 8 | 100 |
| VMR_1279 | wssv-miR16 | 3 | _......_ | 8 | 75 |
| VMR_1275 | wssv-miR144 | 2 | _......_ | 7 | 75 |
| VMR_1265 | tumv-miR-s80 | 2 | _......_ | 7 | 75 |
| VMR_1210 | tumv-miR-s30 | 1 | __...... | 6 | 75 |
| VMR_0788 | prv-miR-8-3p | 7 | ......__ | 2 | 75 |
| VMR_0198 | hbv-miR-b7-5p | 6 | ......__ | 1 | 75 |
| VMR_0195 | hbv-miR-b7-5p | 6 | ......__ | 1 | 75 |
| VMR_0193 | hbv-miR-b7-5p | 6 | ......__ | 1 | 75 |
| VMR_0191 | hbv-miR-b7-5p | 6 | ......__ | 1 | 75 |
