| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgccgcg | 7 | ||
| VMR_0427 | mcmv-miR-m01-4* | 1 | ....... | 7 | 100 |
| VMR_0280 | hsv1-miR-38539 | 2 | ....... | 8 | 100 |
| VMR_0037 | bhv5-miR-b8 | 7 | ....... | 1 | 100 |
| VMR_1305 | wssv-miR83 | 7 | ......_ | 2 | 85 |
| VMR_0253 | hhv6b-miR-ro6-2* | 1 | ......_ | 6 | 85 |
