| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctaaac | 7 | ||
| VMR_0407 | kshv-miR-k12-4-5p | 2 | ....... | 8 | 100 |
| VMR_1112 | rrv-miR-rr1-3-5p | 8 | _...... | 3 | 85 |
| VMR_1111 | rrv-miR-rr1-3-5p | 8 | _...... | 3 | 85 |
| VMR_0071 | dev-miR-d16-3p | 1 | _...... | 6 | 85 |
