| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggtttt | 8 | ||
| VMR_0056 | bmnpv-miR-2 | 1 | ........ | 8 | 100 |
| VMR_1110 | rrv-miR-rr1-3-3p | 2 | _......_ | 7 | 75 |
| VMR_1109 | rrv-miR-rr1-3-3p | 3 | _......_ | 8 | 75 |
| VMR_0924 | rcmv-miR-r43.1-2 | 2 | ......__ | 7 | 75 |
| VMR_0270 | hpv6-miR-h1 | 2 | __...... | 7 | 75 |
