| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtgaag | 7 | ||
| VMR_0424 | mcmv-miR-m01-3 | 2 | ....... | 8 | 100 |
| VMR_0521 | mdv2-miR-m29-5p | 7 | _...... | 2 | 85 |
| VMR_0285 | hsv1-miR-55593 | 7 | ......_ | 2 | 85 |
| VMR_0220 | hbv-miR-b8-5p | 6 | _...... | 1 | 85 |
| VMR_0217 | hbv-miR-b8-5p | 7 | _...... | 2 | 85 |
| VMR_0214 | hbv-miR-b8-5p | 7 | _...... | 2 | 85 |
| VMR_0213 | hbv-miR-b8-5p | 8 | _...... | 3 | 85 |
| VMR_0210 | hbv-miR-b8-5p | 8 | _...... | 3 | 85 |
| VMR_0132 | ebv-miR-bart5_-1_5 | 3 | ......_ | 8 | 85 |
