| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taacgctg | 8 | ||
| VMR_0045 | blv-miR-b3-3p | 1 | ........ | 8 | 100 |
| VMR_0699 | prv-miR-4-5p | 7 | __...... | 2 | 75 |
| VMR_0385 | iltv-miR-i6 | 1 | __...... | 6 | 75 |
| VMR_0321 | hsv2-miR-h11* | 7 | _......_ | 2 | 75 |
| VMR_0068 | dev-miR-d14-3p | 6 | ......__ | 1 | 75 |
