| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taggcgg | 7 | ||
| VMR_1171 | sgiv-miR-1-5p | 2 | ....... | 8 | 100 |
| VMR_1015 | rlcv-miR-rl1-27-5p | 7 | _...... | 2 | 85 |
| VMR_1017 | rlcv-miR-rl1-27-5p | 7 | _...... | 2 | 85 |
| VMR_1016 | rlcv-miR-rl1-27-5p | 7 | _...... | 2 | 85 |
| VMR_1029 | rlcv-miR-rl1-31-3p | 1 | ......_ | 6 | 85 |
| VMR_0802 | prv-miR-8-5p | 2 | _...... | 7 | 85 |
| VMR_0415 | kshv-miR-k12-8 | 2 | ......_ | 7 | 85 |
| VMR_0015 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
| VMR_0014 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
| VMR_0013 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
| VMR_0012 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
| VMR_0011 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
| VMR_0010 | bfv-miR-bf2-3p | 3 | _...... | 8 | 85 |
