| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaaggtgg | 8 | ||
| VMR_0550 | mghv-miR-m1-7-5p | 1 | ........ | 8 | 100 |
| VMR_1064 | rlcv-miR-rl1-8-5p | 2 | _......_ | 7 | 75 |
| VMR_0918 | rcmv-miR-r1-4 | 3 | __...... | 8 | 75 |
| VMR_0132 | ebv-miR-bart5_-1_5 | 1 | _......_ | 6 | 75 |
| VMR_0130 | ebv-miR-bart5 | 2 | _......_ | 7 | 75 |
| VMR_0097 | ebv-miR-bart10* | 7 | __...... | 2 | 75 |
