| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacggga | 7 | ||
| VMR_0146 | ebv-miR-bhrf1-3 | 2 | ....... | 8 | 100 |
| VMR_0927 | rcmv-miR-r6-1 | 6 | _...... | 1 | 85 |
| VMR_0537 | mghv-miR-m1-14-5p | 6 | ......_ | 1 | 85 |
| VMR_0366 | hvt-miR-h2 | 6 | ......_ | 1 | 85 |
| VMR_0274 | hsv1-miR-107969 | 3 | _...... | 8 | 85 |
