| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggagcg | 8 | ||
| VMR_0122 | ebv-miR-bart2-3p | 1 | ........ | 8 | 100 |
| VMR_0512 | mdv2-miR-m25-5p | 7 | ......__ | 2 | 75 |
| VMR_0503 | mdv2-miR-m21* | 8 | ......__ | 3 | 75 |
