| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagtgct | 7 | ||
| VMR_1148 | rrv-miR-rr1-8-3p | 2 | ....... | 8 | 100 |
| VMR_1147 | rrv-miR-rr1-8-3p | 2 | ....... | 8 | 100 |
| VMR_1146 | rrv-miR-rr1-8-3p | 2 | ....... | 8 | 100 |
| VMR_0279 | hsv1-miR-34208b | 1 | ....... | 7 | 100 |
| VMR_1243 | tumv-miR-s60 | 1 | _...... | 6 | 85 |
| VMR_0952 | rhcmv-miR-rh96-1 | 3 | _...... | 8 | 85 |
| VMR_0588 | ohv2-miR-8 | 8 | _...... | 3 | 85 |
| VMR_0551 | mghv-miR-m1-8 | 6 | _...... | 1 | 85 |
| VMR_0027 | bhv1-miR-b6 | 1 | ......_ | 6 | 85 |
