| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aattaca | 7 | ||
| VMR_1068 | rrv-miR-rr1-10 | 2 | ....... | 8 | 100 |
| VMR_0528 | mghv-miR-m1-10 | 3 | _...... | 8 | 85 |
| VMR_0392 | kshv-miR-k12-1 | 1 | _...... | 6 | 85 |
