| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acccagct | 8 | ||
| VMR_0418 | kshv-miR-k12-9* | 1 | ........ | 8 | 100 |
| VMR_1072 | rrv-miR-rr1-11-5p | 2 | ......._ | 8 | 87 |
| VMR_0649 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0646 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0643 | prv-miR-11-1 | 6 | _......_ | 1 | 75 |
| VMR_0642 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0638 | prv-miR-11-1 | 6 | _......_ | 1 | 75 |
| VMR_0637 | prv-miR-11-1 | 7 | _......_ | 2 | 75 |
| VMR_0636 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0630 | prv-miR-11-1 | 6 | _......_ | 1 | 75 |
| VMR_0629 | prv-miR-11-1 | 7 | _......_ | 2 | 75 |
| VMR_0628 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0621 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0619 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0614 | prv-miR-11-1 | 6 | _......_ | 1 | 75 |
| VMR_0613 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0610 | prv-miR-11-1 | 8 | _......_ | 3 | 75 |
| VMR_0417 | kshv-miR-k12-9 | 6 | ......__ | 1 | 75 |
