| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acgacgg | 7 | ||
| VMR_0276 | hsv1-miR-132144 | 2 | ....... | 8 | 100 |
| VMR_1287 | wssv-miR206 | 3 | _...... | 8 | 85 |
| VMR_0367 | hvt-miR-h3-3p | 3 | _...... | 8 | 85 |
