| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcactca | 8 | ||
| VMR_0551 | mghv-miR-m1-8 | 1 | ........ | 8 | 100 |
| VMR_1243 | tumv-miR-s60 | 6 | ......__ | 1 | 75 |
| VMR_1148 | rrv-miR-rr1-8-3p | 8 | ......__ | 3 | 75 |
| VMR_1147 | rrv-miR-rr1-8-3p | 8 | ......__ | 3 | 75 |
| VMR_1146 | rrv-miR-rr1-8-3p | 8 | ......__ | 3 | 75 |
| VMR_0952 | rhcmv-miR-rh96-1 | 8 | ......__ | 3 | 75 |
| VMR_0740 | prv-miR-5-5p | 6 | __...... | 1 | 75 |
| VMR_0739 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0733 | prv-miR-5-5p | 6 | __...... | 1 | 75 |
| VMR_0732 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0731 | prv-miR-5-5p | 8 | __...... | 3 | 75 |
| VMR_0729 | prv-miR-5-5p | 6 | __...... | 1 | 75 |
| VMR_0728 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0725 | prv-miR-5-5p | 6 | __...... | 1 | 75 |
| VMR_0724 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0721 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0720 | prv-miR-5-5p | 6 | __...... | 1 | 75 |
| VMR_0719 | prv-miR-5-5p | 7 | __...... | 2 | 75 |
| VMR_0714 | prv-miR-5 | 6 | __...... | 1 | 75 |
| VMR_0588 | ohv2-miR-8 | 3 | ......__ | 8 | 75 |
| VMR_0279 | hsv1-miR-34208b | 7 | ......__ | 2 | 75 |
