| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtatcag | 8 | ||
| VMR_0707 | prv-miR-4-5p | 1 | ........ | 8 | 100 |
| VMR_0711 | prv-miR-4-5p | 2 | ......._ | 8 | 87 |
| VMR_0706 | prv-miR-4-5p | 2 | ......._ | 8 | 87 |
| VMR_0703 | prv-miR-4-5p | 2 | ......._ | 8 | 87 |
| VMR_1297 | wssv-miR5-3p | 6 | ......__ | 1 | 75 |
| VMR_0923 | rcmv-miR-r43.1-1 | 2 | __...... | 7 | 75 |
| VMR_0922 | rcmv-miR-r43.1-1 | 2 | __...... | 7 | 75 |
| VMR_0921 | rcmv-miR-r43.1-1 | 2 | __...... | 7 | 75 |
| VMR_0713 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0710 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0705 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0702 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0696 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
| VMR_0695 | prv-miR-4-5p | 3 | ......__ | 8 | 75 |
