| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgggtag | 8 | ||
| VMR_1262 | tumv-miR-s78 | 1 | ........ | 8 | 100 |
| VMR_1203 | tumv-miR-s24 | 3 | ......__ | 8 | 75 |
| VMR_0538 | mghv-miR-m1-15 | 8 | __...... | 3 | 75 |
| VMR_0417 | kshv-miR-k12-9 | 2 | _......_ | 7 | 75 |
