| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagggt | 7 | ||
| VMR_1293 | wssv-miR36-5p | 2 | ....... | 8 | 100 |
| VMR_1109 | rrv-miR-rr1-3-3p | 1 | _...... | 6 | 85 |
| VMR_0258 | hiv1-miR-h1 | 1 | ......_ | 6 | 85 |
